Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3889 ATGATGTTCCGTACTTATAGTTCTTTTTCCACTTCAATTTGCACTATACTTGTCCGTTTGACAATATTGTTAATTTTTGTTTTGTGCAAAACAAAAGCGGTTACGAAACTGCCACCAAATGTTTCAATTCCAGCAGTGTTTGTATTTGGAGATTCAATCATGGATACGGGAAACAACAACGACATGGTAACACCATCTCAGTGTAATTACCCTCCATATGGCAAAGATTTTCAAGGAGGAATTCCAACCGGAAGATTTAGCAACGGAAAGGTTCCATCAGATCTTATAGTTGAAGAATTAGGCATTAAAGAGTATCTGCCAGCATATTTGGATCCAAATCTTCAGCCTAGTGAATTGCCTACAGGAGTCAACTTTGCATCCGGTGGTGCAGGATATGATGCTTTGACATCAAAATTAGGGGTAGCTATATCTATGTCTGGGCAGCTAGACTTATTCAAAGATTACATTGTGAAGCTTAAAGGAGTTGTTGGTGAAGATAGAGCAAACTTCATCATAGGCAATGGTCTATTTCTTGTGGTATTAGGAAGCAATGATATTTCTAACACATACTACTTGTCCCGTTTGAGACAAGTGCAATATGATTTCCCTACATACTCTGACCTTTTAGTCAACTCTGCTTATAATTTCTACCAGGAAATGTATGAACTAGGTGCAAGGAGGATTGGAGTATTTAATGCACCACCAATGGGGTGTGTGCCATTTCAGAGAACAATGGCAGGGGGGATAGAAAGAAAATGTGTACAAGAGTACAATGATGCAGCTGTGTTCTTTAACAACAAGTTGTCAATAGGGATTGATTCTTTTAAGCAGAATTTTCCAAGTAGCAGGATTGCTTACATGGATGTTTACAACCCTCTACTTGATATCATTGTAAACAACCAAAAATATGGCTATAAAGTTGGAGACAGAGGGTGTTGTGGCACAGGCAAAATAGAAGTTACTTATTTGTGCAACCATTTGGATTCTATTTGTCCCAACGATTTGGATTATGTGTTTTGGGACAGTTTTCATCCTACTGAATCTGTTTACCGAAAACTTGTTACCCCTATTCTACACAAATACATGGACACATTTATTTAG 1101 0.3787 MMFRTYSSFSTSICTILVRLTILLIFVLCKTKAVTKLPPNVSIPAVFVFGDSIMDTGNNNDMVTPSQCNYPPYGKDFQGGIPTGRFSNGKVPSDLIVEELGIKEYLPAYLDPNLQPSELPTGVNFASGGAGYDALTSKLGVAISMSGQLDLFKDYIVKLKGVVGEDRANFIIGNGLFLVVLGSNDISNTYYLSRLRQVQYDFPTYSDLLVNSAYNFYQEMYELGARRIGVFNAPPMGCVPFQRTMAGGIERKCVQEYNDAAVFFNNKLSIGIDSFKQNFPSSRIAYMDVYNPLLDIIVNNQKYGYKVGDRGCCGTGKIEVTYLCNHLDSICPNDLDYVFWDSFHPTESVYRKLVTPILHKYMDTFI* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3889 366 Pfam GDSL-like Lipase/Acylhydrolase 46 354 IPR001087 GO:0016788
Tpr1g3889 366 PANTHER GDSL ESTERASE/LIPASE EXL3 13 361 - -
Tpr1g3889 366 CDD SGNH_plant_lipase_like 44 361 IPR035669 -
Tpr1g3889 366 SUPERFAMILY SGNH hydrolase 45 359 - -
Tpr1g3889 366 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 46 57 IPR008265 GO:0006629|GO:0016298
Tpr1g3889 366 Gene3D SGNH hydrolase 34 361 IPR036514 -
Tpr1g3889 366 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 13 361 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3889 Tpr-Chr1 43028469 43030601 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3889 22 359 Pollen Coat Proteome AT1G75910 38.889 7.02e-71 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3889 - - mtr:MTR_1g025680 541.191
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3889 1 43028469 43030601 Tpr1g3889 1 43028469 43030601 ECH
Tpr7g0218 7 1786738 1790335 Tpr1g3889 1 43028469 43030601 PCT