Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3888 ATGAATTCCCTTTCTTCTACTCCTCTTCATAATAATCTTCGTTTGTTACTGCTCCGTTTCATACTATGTATTGTGGTTTCATGCAAATTAACAAATGGTATTGTGAAATTGCCACCAAATGTTTCAGTTCCAGCAGTGTTGGTATTTGGAGATTCAATCGTTGATACTGGCAACAATAACAACAACTTGAGAACAACAGCTCGTTGCAATTTCCCACCTTATGGGAAAGATTTTGAAGGAGGGATTCCAACCGGAAGATTTAGCAATGGAAAAGTTCCCTCGGACCTCCTAGTTGAAGAATTAGGCATTAAAGAGCTTCTTCCAGCATACTTGGATCCAAATCTCCAGCCTACTGATTTGCTTACCGGTGTGTGCTTTGCATCCGGTGGTGCTGGATATGATCCTTTGACATCTCAAACATCGGTATGTACACATTCAGCAATATCTTTATCTGGTCAACTAGAGTTGTTCAAAGAATACATAGGAAAGTTAAGAGTACTTGTTGGAGAGGAAAGAACAAATTTCATCCTGGCAAATAGTGTTTTCCTTGTGGTATTTGGCACCAATGACATATCCAACTCATACTTCTTATCTCGTATCAGACAAGTTCAGTATGATTTTTCTTCTTATGCTGATTTTATGGTCAACTCAGCATCTAATTTCTTAAAGGAAATATATGAATTAGGTGCAAGGAGGATTGGAGTATTCAATACACCACCAATTGGGTGTTTGCCATTTCAGAGAACAGCAGCTGGAGGAATAGAAAGAAAAATTGTAGTGCAATACAATGAAGCAGTAGAATTATACAACACCAAATTGTCAAAGGGGTTAACTTCTGTTAATCAGAACTACCCAGACAGCAAAATTGTTTACATTGATGTCTACAACCCTCTGCTTGACATCATTGTAAACTCTAATAAATATGGATATAAAGTGGAAGATAGAGGGTGCTGTGGTACGGGCATAATAGAGGTGGTGTTGTTATGCAACCATTTGGTTTCTACGTGTCCCAATGATTTGGAGTTTGTGTTTTGGGATAGTTTTCATCCAACTGAAAGTGTTTACAAACGCCTCATAGCTCCTATTGTGCAAAAATACTTAAAAGATTTCCTGTGA 1116 0.379 MNSLSSTPLHNNLRLLLLRFILCIVVSCKLTNGIVKLPPNVSVPAVLVFGDSIVDTGNNNNNLRTTARCNFPPYGKDFEGGIPTGRFSNGKVPSDLLVEELGIKELLPAYLDPNLQPTDLLTGVCFASGGAGYDPLTSQTSVCTHSAISLSGQLELFKEYIGKLRVLVGEERTNFILANSVFLVVFGTNDISNSYFLSRIRQVQYDFSSYADFMVNSASNFLKEIYELGARRIGVFNTPPIGCLPFQRTAAGGIERKIVVQYNEAVELYNTKLSKGLTSVNQNYPDSKIVYIDVYNPLLDIIVNSNKYGYKVEDRGCCGTGIIEVVLLCNHLVSTCPNDLEFVFWDSFHPTESVYKRLIAPIVQKYLKDFL* 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3888 371 PANTHER GDSL ESTERASE/LIPASE EXL3 16 366 - -
Tpr1g3888 371 Gene3D SGNH hydrolase 37 368 IPR036514 -
Tpr1g3888 371 CDD SGNH_plant_lipase_like 44 366 IPR035669 -
Tpr1g3888 371 PANTHER GDSL-LIKE LIPASE/ACYLHYDROLASE 16 366 - -
Tpr1g3888 371 SUPERFAMILY SGNH hydrolase 45 368 - -
Tpr1g3888 371 Pfam GDSL-like Lipase/Acylhydrolase 46 358 IPR001087 GO:0016788
Tpr1g3888 371 ProSitePatterns Lipolytic enzymes "G-D-S-L" family, serine active site. 46 57 IPR008265 GO:0006629|GO:0016298
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3888 Tpr-Chr1 43021120 43024080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3888 40 364 Pollen Coat Proteome AT1G75910 40.854 3.66e-72 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3888 - - mtr:MTR_1g025680 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr7g0219 7 1794961 1798040 Tpr1g3888 1 43021120 43024080 PCT