Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3883 ATGACTCTTGAAGACTTCTTTACCTTGACTGAGATGAAAGATGGGCTCATAGCCCCTTCTCGGGTGCAGGAATTGGTCTCTGTAATGAAGAAGGAGCAAGACAGCGTTGTGAAGATCACTGGTGATACAATGAGACAGTGGGCTGCTGTTGCAAGCACTATTGCTGCTACAGAGAATAAAGATTGCCTTGACCTTTTTATTCAATTAGATGGACTGTGGTTCATCGATAAATGGTTAACTGATGCTCAAAAATTTGGTGCTGATACAAATGATGGTTTCGTGGAAGAGTCAATTACTGCAATGTTACGAGCAATTGAAAAGCTATATCTAGACAGTGAAAAGCCAATTACATCAGGAATTTGGGCCACTGTAAGTAACCTTCTTGATCATCACAGCTCCAAGGTTCAAGATAGAGCTAGAGGATTATTTGACAAGTGGAAAGGGGTTGAAAACGGAGATGCTGAAACTCATGATATGGATACTGGTCAAAGAAACCATATGAGTGATAAGAATCTTAAGGAGGAAGGCCAGTTGTCTTCAGTGGATGAGGCTAGTAATGACAATGATCATGTGCTGCAACTTGAAGGGGGTGAGAAGTCGATATTGAGAAGCTCGGATACTCAGATACCAGATAAGGTTGCTAATGTAAAGAAAGAGAGTTCTGACAATGCACACCAATCCTCTGTAAGTTTGGATTGTGAAGATAACAAAGAGCGGTCAAACCATCTTGCTACTGTTTTGACTTCTGTTCAAGAAAATGCTCCCGCAAGTGAAGGTGAGTTGACATCGTCTGGGATCTATAACTTACCTGTACCGAAACTTAGAGAACAACCAGATGATTTACAGTTAAATGACCTATCCATGAAGGAGAAGCAAGAATTGAATGATAATGGCCCTGCAGAAAAAATAGGAGCACCAATAAGTCCTAAGCATGAAACTGTTTCTGTTGGTGTTAGTGAAGCAAAAGTTAAGCCTGTGCCTGCACCAATAATGCCTGAATCTTCTTTGGAACATAAAGTTAAAAGCAATGAAGATGGTGTTAGTGATAGAGTAATTGTTTCTTGTAGCATGAGAACGCGTGCCTCTGATAGAATGAATGTGTTGGATGGTTCCAGAACCACGAATTCTAGCAATCCACAACTATCCAAAGCTTCGGTGAAGGAAGAAGGCAAGAGCCAAGTTTCTAATCAAGGTGACGATACCTCAAATGGCTCTGATTCTTTTAAACAAAGAAAAGATCCCACAAGCCCCAACATTATTGACAAGAGTTCTGACATGGAACTTGAGTATGGTATTGTTGATGCTTTGGAAGTCGCCCGACAAGTTGCTCAGGAAGTTGATAGAAAATATGCCAGATCTGTAAAGGAAGACAAGGACCCAGTTTCTGATCAAGATGATGATACCTCAAATAGTTCTGATTCCTACAAACAGAGCAAAGGTTCCAGAAGCCCTAACATTGTTAACAAGAATTCTAACATTGTTAACAAGAATTCTGACATTGAACTTGAGTATGGTATTGTTGATGCTTTACAAGTCGCTCGACAAGTTGCTCAGGAAGTTGAGAGAGAACTCAATAACTCTTCTTCAGAGAAAATCTCAGAAGGTGGAATCAGGCAAGCTGGCAGCCCCGATTCTGTTGGGAAAAATGATGACCTTGCTTGTGCCCTACCTGAGGAGGTGTCATTCAGGCAAAGCAACTCTGCTGAGGCATGTCCTGAGAAGAAGCATATGAGTGTTTCAGATGATATTATGGCTGAGCCAGAATGTATCCCTGACTTGGAGTCCTCGCAATTGACTGAAGCAGCTCAAGATCCAGGAGGTAATTCAGAGAAAAGCCTTTGCACCTTTGATCTTAATGAAGAATATGGTTCTGATGATGTGAATGTTTCTGCAAATACCATATCTACAACACCGATACCTGTTGTCTCTGCTTCAAAACCTGCACAGACTTCAGGATTGCCAACAGCCCCTTTACAGTTTGAAGGAACACTTGGATGGAAAGGGTCGGCTGCCACCAGTGCCTTTCGTCCTGCATCACCTCGTAAAATTTCTGATAATCAAAAGACTGTTTCTGCTGGTGGGAACTCTGATATTTCAAAACAGAGGCAGGATTTTCTTGATTTTGATTTAAATGTGGCTGGGGGTGAAGAAGAATTGGTAAAACAAATTGGTGAATCTTCAAGCCTGCCTTCTGGGCAATCATCAGTGGAACATAGCCCTAAAAGATCAAGGAGGTTTGAATTAGATTTGAACAGTGCTGGTGATGATGGTGATAATACCCAACCTTCATATCAGAGGATGGAGGGGCAGCTCTTCTTTGGAAGAAATGGCTATTCGAGCCCATCACCTGCATCATCTTCGTCGTCAATGCAGCCTTCAGTTCGAAACATTGATTTGAATGATAGACCATACTTTCAAACTGATTTGGTGGACCAAGGGCCTATTAAATCTTCTTCAAGCATCGAAGCATATGGACTTTCCAAATCTGACGCGCCTGCAATATCTATTTTGGGTGCCAAGGTGGAAGTTGGTAGAAGAGAGCATGTTCCTCAAATTTGGTCTTTGCCAAATGGCAAGGCTGTTGAGCCTGCAATGGATCTTACAATGATGCCAGGATCAGGTGGCGTTTCAGGGATGGGCCCTGCGGTGTCCTACAATCATTCAACTTTTTTGGGATATAATGGACTGGCGTCAATGCCCTCTTTGTCTTTTTCGCCAGCCGCTTATGGATCAGGTGGTACAATTCCATATATGGTGGACTCAAGAGGAGCCCCAGTTGTGCCTCAAGTTGGGGGATCTTCATCAACTGTCCTGTCATCGTACGCTCAGCCCCCGTATATTATGAGCATGCCCGGTACGCAACTTGGTTTAAATGGTGTTGGACCTTCCCGTCCCAACTTTGATCTTAACTCTGGCTACTTGATTGATGGCGGGAATAGAGATGCATTGGCTACAAGGCCATTTTTGTTTCCTGGTCAGAGCAGAGCTATGGAGGATAGGACCCTTCAACAATCCTCAAGTTCAGGGGTCGGTGGGAAAAGAAAAGAACCAGATGGTAGCTGCTGGGAAACCTATCCATTTGGCTACAAACATCAGCAACCGCCGTGGAAGTAG 3114 0.4303 MTLEDFFTLTEMKDGLIAPSRVQELVSVMKKEQDSVVKITGDTMRQWAAVASTIAATENKDCLDLFIQLDGLWFIDKWLTDAQKFGADTNDGFVEESITAMLRAIEKLYLDSEKPITSGIWATVSNLLDHHSSKVQDRARGLFDKWKGVENGDAETHDMDTGQRNHMSDKNLKEEGQLSSVDEASNDNDHVLQLEGGEKSILRSSDTQIPDKVANVKKESSDNAHQSSVSLDCEDNKERSNHLATVLTSVQENAPASEGELTSSGIYNLPVPKLREQPDDLQLNDLSMKEKQELNDNGPAEKIGAPISPKHETVSVGVSEAKVKPVPAPIMPESSLEHKVKSNEDGVSDRVIVSCSMRTRASDRMNVLDGSRTTNSSNPQLSKASVKEEGKSQVSNQGDDTSNGSDSFKQRKDPTSPNIIDKSSDMELEYGIVDALEVARQVAQEVDRKYARSVKEDKDPVSDQDDDTSNSSDSYKQSKGSRSPNIVNKNSNIVNKNSDIELEYGIVDALQVARQVAQEVERELNNSSSEKISEGGIRQAGSPDSVGKNDDLACALPEEVSFRQSNSAEACPEKKHMSVSDDIMAEPECIPDLESSQLTEAAQDPGGNSEKSLCTFDLNEEYGSDDVNVSANTISTTPIPVVSASKPAQTSGLPTAPLQFEGTLGWKGSAATSAFRPASPRKISDNQKTVSAGGNSDISKQRQDFLDFDLNVAGGEEELVKQIGESSSLPSGQSSVEHSPKRSRRFELDLNSAGDDGDNTQPSYQRMEGQLFFGRNGYSSPSPASSSSSMQPSVRNIDLNDRPYFQTDLVDQGPIKSSSSIEAYGLSKSDAPAISILGAKVEVGRREHVPQIWSLPNGKAVEPAMDLTMMPGSGGVSGMGPAVSYNHSTFLGYNGLASMPSLSFSPAAYGSGGTIPYMVDSRGAPVVPQVGGSSSTVLSSYAQPPYIMSMPGTQLGLNGVGPSRPNFDLNSGYLIDGGNRDALATRPFLFPGQSRAMEDRTLQQSSSSGVGGKRKEPDGSCWETYPFGYKHQQPPWK* 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3883 1037 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 18 151 IPR035441 -
Tpr1g3883 1037 Pfam TFIIS helical bundle-like domain 101 147 IPR017923 -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 723 743 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 366 422 - -
Tpr1g3883 1037 ProSiteProfiles TFIIS N-terminal domain profile. 80 153 IPR017923 -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 994 1037 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 363 423 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 523 548 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 671 698 - -
Tpr1g3883 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 451 1037 - -
Tpr1g3883 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 387 448 - -
Tpr1g3883 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN 1 389 - -
Tpr1g3883 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 1 389 - -
Tpr1g3883 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 387 448 - -
Tpr1g3883 1037 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 451 1037 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 450 472 - -
Tpr1g3883 1037 Coils Coil 510 530 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 450 490 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 679 698 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 473 490 - -
Tpr1g3883 1037 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 61 157 IPR035441 -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 216 237 - -
Tpr1g3883 1037 MobiDBLite consensus disorder prediction 997 1011 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3883 Tpr-Chr1 42961469 42967364 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Tpr1g3883 Med26 0.00029 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3883 - - lja:Lj5g3v0238160.2 1340.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3883 1 42961469 42967364 Tpr1g3883 1 42961469 42967364 ECH