Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3871 ATGGCTCTCATCACTAATCCCTTGCCTGAACAATCCCACCCCAAAAAACAACTCCCAAAACACAACCATAAGAACCAACAACAAAAACAGGAACAAAAACAAAAGCAAAAACAAAAACCAAAACCAAAACCAAAACAAAAGCCACCATCTTCATGGGATCAAATCAAAAACATCCTAACTTGCAAACAAATCGAAGGTTCAAAAGTTCATGATCCCTCAAAACCAAATAACAACAATGGATACTCAAAATTGGGTTCTTCTTGTAGCTCAATTTGTAGCTTCAGAGATGTTGTTCATGGAAACACTAGAGTTGTTCATAGGTCTGATAATTCATCACCAGAAAGTAGCATCTTGGGTCAAGAAACAAGTTTGCTCAAAAGAAAACCTGTTACTGCTTCATCATCATCTTCATCAACTCGCTCCGCATCATGTTCTGGGAAATCATCCAACGGTGGTAGAAACTACACGTCATCATCTTCTTCTTCTAGAGGAATGCAGTTCAGGAAGCTGTCTGGATGTTATGAATGTCACATGATCGTTGACCCTAGCAGGCTACCAATTCCTAGGAGCACAGTGTGTGCTTGTGATCAATGTGGAGAGGTCTTCCCTAAGATTGAAAGCTTGGAGCTTCATCAAGCTGTTCGTCATGCTGTTTCGGAGCTGGGTCCAGAGGATTCGGGTCGGAACATAGTGGAAATAATCTTCAAGTCAAGTTGGTTGAAAAGGGAATCTCCAATGTGTAACATCGAACGGATATTAAAAGTCCACAACACCCAACGCACAATCCAACGGTTCGAAGAATGCAGAGACTCCGTAAAGTCACGTGCAGCCTCCACCACCAAGAAAAACCCCCGCTGTGCCGCAGACGGCAATGAACTTCTCCGATTCCATAGCACAACCTTATCCTGCGCACTCGGTGCACGTGGTTCCTCCGCCTTATGCGCCGCCGTACCAGGCTGCGGTGTCTGCACCATTATCCGGCACGGTTTTCAAAACAAAGGTGGAGTGAAGACCAATGCTAGCAGTGGTATGGCCCACGACAATTCAGTTGGAAGGATCGGAGAAGATTCTAGAAGAGCGATGCTTGTGTGCCGTGTTATCGCCGGAAAAGTGAAGCGTGTGGCGGAGGAAGGAGCGGCGCCGGTGACATTGGAGGAGGAGAATGTGGCGTTTGATTCAGTTGCGGGAAATGCGGGAATTTACTCGAATCTCGAGGATCTAACCGTTTTCAATCCAAAGGCTATTCTTCCTTGTTTCGTAGTTATTTACAAGGTGCTTTCATAG 1284 0.4525 MALITNPLPEQSHPKKQLPKHNHKNQQQKQEQKQKQKQKPKPKPKQKPPSSWDQIKNILTCKQIEGSKVHDPSKPNNNNGYSKLGSSCSSICSFRDVVHGNTRVVHRSDNSSPESSILGQETSLLKRKPVTASSSSSSTRSASCSGKSSNGGRNYTSSSSSSRGMQFRKLSGCYECHMIVDPSRLPIPRSTVCACDQCGEVFPKIESLELHQAVRHAVSELGPEDSGRNIVEIIFKSSWLKRESPMCNIERILKVHNTQRTIQRFEECRDSVKSRAASTTKKNPRCAADGNELLRFHSTTLSCALGARGSSALCAAVPGCGVCTIIRHGFQNKGGVKTNASSGMAHDNSVGRIGEDSRRAMLVCRVIAGKVKRVAEEGAAPVTLEEENVAFDSVAGNAGIYSNLEDLTVFNPKAILPCFVVIYKVLS* 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3871 427 MobiDBLite consensus disorder prediction 104 163 - -
Tpr1g3871 427 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 221 IPR013087 -
Tpr1g3871 427 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 27 426 - -
Tpr1g3871 427 Gene3D - 217 425 - -
Tpr1g3871 427 SUPERFAMILY ADP-ribosylation 218 424 - -
Tpr1g3871 427 PANTHER BNAC02G23540D PROTEIN 27 426 - -
Tpr1g3871 427 MobiDBLite consensus disorder prediction 1 55 - -
Tpr1g3871 427 ProSitePatterns Zinc finger C2H2 type domain signature. 193 216 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3871 Tpr-Chr1 42837521 42842752 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3871 1 426 C2H2 Transcription Factor Family AT1G75710 62.260 2.21e-174 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g3871 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3871 - - aprc:113874200 563.533
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3871 1 42837521 42842752 Tpr1g3871 1 42837521 42842752 ECH