Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3864 ATGGACCTCGACAACAAAGATGCAAAACCCATTTTGGTAATCTTAGTGGGTGCGCCTGGAAGCGGGAAATCAACCTTCTGTGATGAGGTTATGCGTTCCTCTTCTCGTCCTTGGCTTCGCGTTTGTCAGGACACTATTGGAAATGGTAAAGCAGGAACTAAAGCTCAATGCTTAAGTAGTGCAGCTAGAGCATTGAAGGATGGGAAGAGTGTATTCATTGACAGGTGCAATCTTAACAGAGAACAGAGATCAGATTTTTTAAAGCTTCGGGGTGAAACCCAAATAGATATGCATGCAGTTGTACTTGATCTTCCTGCTAAGCTTTGTATTTCTCGATCTGTTAAACGATCTGGGCATGAAGGAAATTTGCAAGGTGGAAAAGCTGCTGCAGTTGTGAATAGAATGCTTCAAAGTAAAGAGCTGCCCAAATTAAGTGAAGGCTTTAACCGAATAACATTTTGTCAGAGTGAGAGCAATGTCAAAGATGCTATTGATACATACCAAAAACTTGGGCCACTAGAGAACCTTTCACATGGTTGCTTTGGTCAGAAAAATCCAGATTCCAAAATCCAATCTAGTATAATGAAATTCCTGAAAAAGGCAGAGGTTCCAGTTGATACTGCATCTAAAGAAAATGTCATCGGAGACTCTACTTCCCAGACTCCTGGGAAAAATGATTCCCTCTGCAAAGATAAGGAAAAAATTACATCACCGCATGATAATTCCAAGTTAGGGTCAAAGGAAACAAAAGGCCAGGCTGATAAATCTGCCGGTTCCTATCACAATCAAATTTCTTTGGATGATCCCCCAACACTGGCATTTCCATCTATTTCAACAGCTGATTTCCAATTTAACCATGACAAGGCAGCTGATATCATTGTTGAGAAGGTCGCGGAGTACTCAAAAAAGATGGGGAATGCCAGGCTTGTTCTAGTCGACTTGACACACAAGTCAAAGATTTTGTCCTTAGTTAAATCCAAAGTGGCAGAAAAGAACATTGATACCCAAAAGTTCTTTACCCATGTTGGAGACATCACTCGCCTTCATTCCACAGGAGGTTTGCGGTGTAATGTCATAGCTAATGCTGCCAATTGGCGGCTAAAACCTGGTGGCGGAGGAGTTAATGCATCAATTTTTGATGCCGCAGGTCCTGAACTGGAGTCTGCAACCAAAGAAAAAGCGAAGACTCTTTCACCTGGGAATGCTGTTGTTGTCCCTCTACCTTCTTCTTCTCCATTGTTCACAAGAGAAGGTGTGACCCATGTAATACATGTCCTTGGACCTAACATGAATCCACAAAGACCAAATTGTCTTAACAATGATTATGAAAAAGGCTGCAAAGTTCTCCAAGATGCTTATGCATCACTATTTGAAGGTTTTGCATCAATCGTTAGGAACCAGATGCAGCATAATGAAAACCTTGGGAAAAAGACTTTGGAGTTGCAGGATCAGTCTGAAAAGTGTTCAATAAATCATTCCACTAATTCTGATCAAAAGAGTAAGAGAGATGCTGATCATGGACCGGAAAAAAGCAAGAAATACAAGGGAACTCACGATGGTTTTGAATTGACCTTTACGGGTTCTAAGGATGAAAAGGTAGATTCAGAGCATAGAAGAACTGATGGCAGCACGAGGAAGGCTTGGGGGTCATGGGCTCAAGCTCTTCACCAAATAGCTATGCATCCTGAAAAGCATAAGGATCACTTGCTTGAAATTTCAGAAGACATTGTTGTATTGAATGATATGTATCCTAAGGCACAGAAGCATGTTCTGGTGTTGTCACGTAGTAGAGGTCTTGATTGCCTGTCAGATGTCCAAGAGGAGCACCTTTCGGTATTGAAAAGGATGCATGCAGTGGGTTTAAAATGGGCTGAGAAATTCTTGAGCGAAAATGCTTCACTAGTATTTCGCCTTGGATATCACTCGGCTCCGTCAATGCGACAACTACATTTACATGTTATTAGCCAGGACTTCGAATCAAAGCATTTGAAAAATAAGAAGCATTGGAACTCGTTTAACACTGCTTTCTTTCGTGACTCAGTAGATATAATTGAGGAGGTATCTAATCATGGAAAAGCAACATTGAAAGATGATGACAAGCTACTGTCTATGGAGTTGAGGTGCCAAAGATGTAAAAGTGCACATCCAAACATACCGCGCCTAAAATCACATATTAGTAGCTGCCAAGCACCCTTTCCTGCTTACTTACTCGAAAACGGGTGTTTGGTCAGTGCATGCACCAGGTAA 2247 0.4152 MDLDNKDAKPILVILVGAPGSGKSTFCDEVMRSSSRPWLRVCQDTIGNGKAGTKAQCLSSAARALKDGKSVFIDRCNLNREQRSDFLKLRGETQIDMHAVVLDLPAKLCISRSVKRSGHEGNLQGGKAAAVVNRMLQSKELPKLSEGFNRITFCQSESNVKDAIDTYQKLGPLENLSHGCFGQKNPDSKIQSSIMKFLKKAEVPVDTASKENVIGDSTSQTPGKNDSLCKDKEKITSPHDNSKLGSKETKGQADKSAGSYHNQISLDDPPTLAFPSISTADFQFNHDKAADIIVEKVAEYSKKMGNARLVLVDLTHKSKILSLVKSKVAEKNIDTQKFFTHVGDITRLHSTGGLRCNVIANAANWRLKPGGGGVNASIFDAAGPELESATKEKAKTLSPGNAVVVPLPSSSPLFTREGVTHVIHVLGPNMNPQRPNCLNNDYEKGCKVLQDAYASLFEGFASIVRNQMQHNENLGKKTLELQDQSEKCSINHSTNSDQKSKRDADHGPEKSKKYKGTHDGFELTFTGSKDEKVDSEHRRTDGSTRKAWGSWAQALHQIAMHPEKHKDHLLEISEDIVVLNDMYPKAQKHVLVLSRSRGLDCLSDVQEEHLSVLKRMHAVGLKWAEKFLSENASLVFRLGYHSAPSMRQLHLHVISQDFESKHLKNKKHWNSFNTAFFRDSVDIIEEVSNHGKATLKDDDKLLSMELRCQRCKSAHPNIPRLKSHISSCQAPFPAYLLENGCLVSACTR* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3864 748 ProSitePatterns HIT domain signature. 637 655 IPR019808 -
Tpr1g3864 748 MobiDBLite consensus disorder prediction 226 250 - -
Tpr1g3864 748 Gene3D - 550 731 IPR036265 -
Tpr1g3864 748 SUPERFAMILY Macro domain-like 318 458 IPR043472 -
Tpr1g3864 748 Gene3D - 2 169 IPR027417 -
Tpr1g3864 748 MobiDBLite consensus disorder prediction 484 519 - -
Tpr1g3864 748 PANTHER APRATAXIN-RELATED 9 745 - -
Tpr1g3864 748 Pfam Scavenger mRNA decapping enzyme C-term binding 556 668 - -
Tpr1g3864 748 Pfam Macro domain 360 439 IPR002589 -
Tpr1g3864 748 MobiDBLite consensus disorder prediction 211 225 - -
Tpr1g3864 748 MobiDBLite consensus disorder prediction 496 519 - -
Tpr1g3864 748 PANTHER APRATAXIN 9 745 IPR026963 GO:0003677|GO:0006281|GO:0033699
Tpr1g3864 748 SUPERFAMILY HIT-like 545 712 IPR036265 -
Tpr1g3864 748 Pfam AAA domain 12 139 - -
Tpr1g3864 748 SMART YBR022w_8 337 489 IPR002589 -
Tpr1g3864 748 MobiDBLite consensus disorder prediction 211 259 - -
Tpr1g3864 748 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 155 IPR027417 -
Tpr1g3864 748 Gene3D Leucine Aminopeptidase, subunit E, domain 1 311 465 IPR043472 -
Tpr1g3864 748 Pfam C2HE / C2H2 / C2HC zinc-binding finger 673 726 IPR032566 -
Tpr1g3864 748 ProSiteProfiles Macro domain profile. 325 591 IPR002589 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3864 8 744 C2H2 Transcription Factor Family AT5G01310 58.073 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3864 K10863 - gmx:100786762 1174.46