Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3854 ATGGATGACAAGATAGACACTGCAGAAAAGAAGGTGTTGGTTGATATTGTAAAATTGGCACAAAGGAAAGGCATGAAGGGTACAATGGGAGACTGGAAAGAATTCTTGAACAGTCATGATAAAAAATTTGGGGCAGGTATGAGTGATCCATCAAAGAGGTCCCATGAGGATTTGGCTGCATTTCTAAAGACATTCTCAAAGGATGATGATTTGAAGTTTTTTGGTAATATCATGCGGCATCATTCAAATCAATACACGTTAGAGAGACTGAAAGATAGATCTCATGATTCCCCCGAGCAGAGGCTAGTCCAAGTAACTCTCCAGCACCCTAGGTATCCACGGGATTATTCACTGCCATCTATTGATGAGGGATGGTTAGTGATAAATCTTAAAAAAAAGGCCAAGGGGATAAGATCTACTGCAATGGTTGCTGTTGATTGTGAAATGGTTCGTTGTGAAGACGGGAATGAAGCCTTAGTAAAAGTCTGTGTTGTAGATCACAATTTAGAGGTCAAGCTACACAAACTTGTTAAACCGGAGAAAGCAATCGTAGACTACAAAACAGAGATTACTGGTGTCTCTTCTGAAGATCTAAAGACAGTGACTTGCTCCTTAGCTGATATACAGAAATCGATGAAGAAGTTGTTATCCAATGGAACTATATTAGTGGGACACAGTTTACATAATGATCTACGTGTGCTGAAGCTAGATTATGTTAGAGTGATCGACACTGCATATATCTTCCAACCCTTGGATGGATCAATTCACATGAGACCTTCTTTGAATAGTTTATGTCAGTCTGTGTTGGGCTATGAAGTTCGGAAAAAGGGTGCTTCACATGATTGTCTAGATGATGCATGTGCAACAATGAAACTTGTTCTTGCAAAGATAAACAATGGTGTTGATAAGCCATTTCCATTGACATTGGTTCAAGAGCCTGTAACAGAAAGTGACATGGCGAAACTGTTTATTCACAGAATTCCAACCACTATGAACGTTGAAGCACTACATGAAATTGTTCCCGGAGACTTCACGATAGAGCGAAAGCCTTCCAGGAATGATCAAGGAGATAAGTATTCCGCCTTAGCGATCTTTAAGAACCATCGAGAGGCACATGATGCATATGAAAATCTCCAAGGCAGCCAATCAAAGGATTCAAATGGGCGTCTACAGAAAAATGTCACATGTCGGCTGAGTACGGGCATGAGTGTCAGTGTATATGTTCGGGAAATGGGAATTGATGATCACCACAAAAAAATGCCATCTAAGAGAGATTTACCAGAGGATGAGACAGTTGATGTTCCCAAGAACAAGAAACTAAAAATGGATCCTGAAGTTGAAAAGGGCTACTTGAAAGAGATAGAAGCACTGAATCAACAATTGAAAGAAAGTGTGTCGGAGATCGATTCATTGAAGGAACAGTTGAGAAAAGTGGATCCTGAAATTGTAAAGGATGCCCACTTGAAAGAGATTGAAGCATTGAATCAACAATTGAAAGAACGTGAATCGGAGATTGAATCATTGAAGGAACAGACAAGGAAAAAGGACTTTGAAATCACCACTCTGCATAAAATGGTATCAAGCTTAAAACAAAGGCAAAAACCTAAAAAATAG 1614 0.3953 MDDKIDTAEKKVLVDIVKLAQRKGMKGTMGDWKEFLNSHDKKFGAGMSDPSKRSHEDLAAFLKTFSKDDDLKFFGNIMRHHSNQYTLERLKDRSHDSPEQRLVQVTLQHPRYPRDYSLPSIDEGWLVINLKKKAKGIRSTAMVAVDCEMVRCEDGNEALVKVCVVDHNLEVKLHKLVKPEKAIVDYKTEITGVSSEDLKTVTCSLADIQKSMKKLLSNGTILVGHSLHNDLRVLKLDYVRVIDTAYIFQPLDGSIHMRPSLNSLCQSVLGYEVRKKGASHDCLDDACATMKLVLAKINNGVDKPFPLTLVQEPVTESDMAKLFIHRIPTTMNVEALHEIVPGDFTIERKPSRNDQGDKYSALAIFKNHREAHDAYENLQGSQSKDSNGRLQKNVTCRLSTGMSVSVYVREMGIDDHHKKMPSKRDLPEDETVDVPKNKKLKMDPEVEKGYLKEIEALNQQLKESVSEIDSLKEQLRKVDPEIVKDAHLKEIEALNQQLKERESEIESLKEQTRKKDFEITTLHKMVSSLKQRQKPKK* 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3854 537 SUPERFAMILY Ribonuclease H-like 142 299 IPR012337 -
Tpr1g3854 537 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 11 430 - -
Tpr1g3854 537 Gene3D - 136 304 IPR036397 GO:0003676
Tpr1g3854 537 CDD REX1_like 143 294 IPR034922 -
Tpr1g3854 537 Coils Coil 484 515 - -
Tpr1g3854 537 Pfam Exonuclease 143 292 IPR013520 -
Tpr1g3854 537 PANTHER SMALL RNA DEGRADING NUCLEASE 2 11 430 - -
Tpr1g3854 537 Coils Coil 447 474 - -
Tpr1g3854 537 SMART exoiiiendus 141 302 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3854 Tpr-Chr1 42575943 42583081 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3854 138 292 C2H2 Transcription Factor Family AT3G27970 34.302 5.10e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3854 K14570 - gmx:100785565 699.508