Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3853 ATGGTGAAATCTAACTCATGCTTAAGGTTAATATGCGGTGGTGGTGATTCTTCTAACAAACAAGTTGTTTCAGAGGTCAAGGATTCTAATGATAAACGTGGTTGGAGTTTCCGGAAGAGATCTGCAAGGCATCGTGTGCTTAGCAATACTGTTATAACAACAGAGACGACGTCTTTGGCAAATAAGGAGATTCCGGAATATACAAGTACTAATTTTCAATCTCCAGCTGAACCTAATGTCGTTGAAAAGATTTGTACGACAGATTTCTCTGACGAGAAGCCTCAGTTATCCTCCAATGCATACTCAGAGATTTCAGAAAAAATTGTCACTGAAGCTGAGGGTAAAGCGGATGTCAATCCACCAGAATCTGCGGTGATAATCGTCCAGACTTCCATTAGAGCATATTTGGCTCAGAGAGCACTTCTGAAGAGTAAGAATGTAGTGAAGTTGCAAGCTGCTGTTCGAGGTCACTTGGTCAGAAGGCACGCTGTAGGAACATTGCGATGTGTTCAAGCTATTGTTAAAATGCAGCTCCTTGTACGAGCACGACATGCTCAGAAGTCACAATCAGATGGCAAAAATGATTACTCAAAAACTTTGGATAACGAGCATGACACGGACAAATCAAATTTGAAGCACACTTCTGTGGAAAAGCTTCTCAGCAATAAGTTTGCTCGTCAGCTTCTGGAATCAACACCAAAAGACAAACCTATCCATGTCAAATGTAATCCTTCTAAAGGCGATTCTGCTTGGAAATGGTTGGAGAGATGGATGTCTGTTCCAGCAATAGATTCTACAGAGAATAAAAAGCCAATCTGTGTGTCAGAACAATCAGATGAAACCAAAGATAGCACTCGTGTATCTCAATTGGAAACAGATACTCCGTCTCAAGTTATTCTTCAGTTAGCTGATTCACCTATACCATCTGAGGATGAAGAGAAGACCGCTACTTATGAGGATAGCAACTCATACTTTGAAAGAAACCCCTCTACATCTTCTCTTATAAACAATAACTTGGAAGAGGCTCATCCCGAAAAGATGCTTTCAATTGGTGCTAGAGTATCCTCCAATAAAAGTGAATCTTTTTTCGATACAAAAAGTGAATCTTTTCAAAAGGAAATTTTGGATTCAAATGCAAGTGTTCCACAAGAACCCAGTTCTCCTCAGAATCCAGAAATGGACGATGAACAGCTCAAACATTCACGTGGTGCCAAAATAGCCTCCAAGACAACTGATTCTTTTGAAAAGGAATTGTTCGGTTCAAATGCAAGTGTTCCACGGGAGCCTGGTTCTCCTCAGAGACCAGAAAGTGACAGTGAACAGTGCAAACAACCAGTAAAAGCATTTACCTCAGACCAACTAGAGACCGAGGGAAAGAAAGTTGCATATGTATCAAGGAAGTTAAGCAATCCAGCATTTATTGCCGCTCAATCAAAATTTGAAGAGCTGAGTTCAAATGTGAATTTGGGTAGGCCAAGTTCTTTGTTCGATCAGGATGTATCAGTTGAATCACAAGCAGATACTGCATATATATCAAAAGAGTTCATCTCATCTGAGAATTCTACTCCCTATCCTTCTAGAATTGGTGATCCTGAAACTGTACTCTCTATTTCTTCAACTCTTGATTCACCTGACAGATCAGAGACTTTGGAGAGCGAGCACGATGCCAAAGATTTAGTAGAAGGGATAGTTAATCCTGAAAACAATATTGATTATGGTGTCGGAGCCAATACTCCGGCTTCTAACTTGCCTATCTCCGATTCTGATCGATTAGAAACTGTTAACGACTCCAGTGGAAATATTGTTGATTCAGTGGTGCCTGAGAACTTCAAAGAGCCTTCTGTTGAGCCTGAGGTAAATGCATCTGACATGTTGAGAGAAAACACCGAGACTGTTCTACCAGATTTTAAGTTGTCAGCTTCACCAGGAAGCTATATGACAATACCCGAGTCTCAAGGAACCCCTTCAAGTCAGGTTTCGGTGAAACCTAATAAAGTAAACAAGACTGGATCAAGTGGTAAACGTAGGGCACTGTCTATGGGTAACAAGTCTCCTGCAAATTCAAATAACGATTCAGGCTCAAGAGTGGCTGTTGGTAACAAGTCTCCTGCGAATGCGAATCACGATTCAGGCTCAAGAGGTAGTAGAGAACAATTGCCTAAGGATCAGCTGAATGGAAAGAGACGCAATTCATTTGGCTCAATAAAACCTGACCAGACTGATCAAGAGCCTACTAGAGATAATAGTAGTAGCAATAATTCTCTTCCCCGTTTCATGCAAGCTACACAATCTGCTAGGGCCAAGATAAATGCAAATTCCTCTCCAAGATCAAGTCCAGATGTACATGACCCTGACGTTCACATTAAGAAGAGACATTCCTTGCCTGGTGCAACTGGTAAGCAGGGTTCTCCACGTGTCGAACAATCAATATCTCCAGCTCAGCAAGGCACAAAGGGCAATGGTTCAACCGAGAGAAAATGGCAGAGGTGA 2490 0.4149 MVKSNSCLRLICGGGDSSNKQVVSEVKDSNDKRGWSFRKRSARHRVLSNTVITTETTSLANKEIPEYTSTNFQSPAEPNVVEKICTTDFSDEKPQLSSNAYSEISEKIVTEAEGKADVNPPESAVIIVQTSIRAYLAQRALLKSKNVVKLQAAVRGHLVRRHAVGTLRCVQAIVKMQLLVRARHAQKSQSDGKNDYSKTLDNEHDTDKSNLKHTSVEKLLSNKFARQLLESTPKDKPIHVKCNPSKGDSAWKWLERWMSVPAIDSTENKKPICVSEQSDETKDSTRVSQLETDTPSQVILQLADSPIPSEDEEKTATYEDSNSYFERNPSTSSLINNNLEEAHPEKMLSIGARVSSNKSESFFDTKSESFQKEILDSNASVPQEPSSPQNPEMDDEQLKHSRGAKIASKTTDSFEKELFGSNASVPREPGSPQRPESDSEQCKQPVKAFTSDQLETEGKKVAYVSRKLSNPAFIAAQSKFEELSSNVNLGRPSSLFDQDVSVESQADTAYISKEFISSENSTPYPSRIGDPETVLSISSTLDSPDRSETLESEHDAKDLVEGIVNPENNIDYGVGANTPASNLPISDSDRLETVNDSSGNIVDSVVPENFKEPSVEPEVNASDMLRENTETVLPDFKLSASPGSYMTIPESQGTPSSQVSVKPNKVNKTGSSGKRRALSMGNKSPANSNNDSGSRVAVGNKSPANANHDSGSRGSREQLPKDQLNGKRRNSFGSIKPDQTDQEPTRDNSSSNNSLPRFMQATQSARAKINANSSPRSSPDVHDPDVHIKKRHSLPGATGKQGSPRVEQSISPAQQGTKGNGSTERKWQR* 830
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3853 829 MobiDBLite consensus disorder prediction 725 779 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 269 329 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 371 454 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 184 214 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 643 829 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 802 829 - -
Tpr1g3853 829 ProSiteProfiles IQ motif profile. 143 172 IPR000048 GO:0005515
Tpr1g3853 829 SMART iq_5 120 142 IPR000048 GO:0005515
Tpr1g3853 829 SMART iq_5 143 164 IPR000048 GO:0005515
Tpr1g3853 829 MobiDBLite consensus disorder prediction 288 303 - -
Tpr1g3853 829 Gene3D - 121 168 - -
Tpr1g3853 829 PANTHER IQ-DOMAIN 5-RELATED 1 828 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 186 214 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 372 392 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 518 545 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 518 555 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 393 412 - -
Tpr1g3853 829 PANTHER PROTEIN IQ-DOMAIN 32 1 828 - -
Tpr1g3853 829 Pfam IQ calmodulin-binding motif 123 140 IPR000048 GO:0005515
Tpr1g3853 829 Pfam IQ calmodulin-binding motif 145 162 IPR000048 GO:0005515
Tpr1g3853 829 MobiDBLite consensus disorder prediction 606 627 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 435 451 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 273 287 - -
Tpr1g3853 829 MobiDBLite consensus disorder prediction 644 713 - -
Tpr1g3853 829 Pfam Protein of unknown function (DUF4005) 738 802 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3853 Tpr-Chr1 42569284 42574650 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3853 444 829 IQD Protein Family AT1G19870 34.314 1.57e-37 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3853 - - cam:101492650 1045.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3853 1 42569284 42574650 Tpr1g3853 1 42569284 42574650 ECH