Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3845 ATGGACGATCGTGAAAATGGAAGGCACAAAGCAGATCAATATAAATCTGCTCAGGGACAGTGGTTGATGCAACAACATCAGCATCAGCATCCTTCCATGAAACAGATTATGGCAATCATGGCTGAACGAGATGCAGCCATTCAAGAAAGAAATCTGGCCATTTCTGAGAAAAAGGCAGCACTTGCAGAACGTGACATGGCATTCCTGCAGCGAGATACTGCAATTGCAGAACGAAATAATGCACTTATGGAAAGAGATAATGCAATCGCAACCCTTCAGTTTCGAGAAAATGCTTTGGCCAACGGCGGTATGTCATCATGCCCTCCAGGATGTCAAATCTCACGGGGAGTTAAGCATATACATCATCTGCCGCAACAGCAACAGGTAAACCATTTGCCTACTATGGGTGATCCTTCTTACGGAACACGCGAATTGCACACAACCAATGCCCTCCCAGAAGCACCCATTCCTTCAGAGGTTGGGAAGCCACCTAGGCGGGCCAAACGACCGAAGGAAAATAAGTCTGTTTCACCCAACAAGAAGACTCCAAAAACTACTAGAAAGGTCAAGAAAGAGGGTGAGGATTTAAACAAGACAATGTTTGCCAACGACGAAGCACTTGAATGGAAGAGTAGTCAAGAAATTATAAACGGAGGTGATGATCTTAACAAGCAGTTACCGGTCTCAAAGGCTGATTGGAAACCTCAGGACTTTGCATTGAACCAAGTTGCATACGATGATTCAACCATGCCAGCACCAGTGTGCTCTTGTACTGGTGTTCTGAGACAGTGCTACAAATGGGGCAATGGAGGTTGGCAATCTGCTTGTTGTACAACCAATTTATCGGTGTATCCGCTTCCAGCAGTGCCCAACAAAAGACATGCTCGAGTAGGTGGTAGAAAAATGAGTGGAAGTGCTTTCAATAAACTGCTTAGCCGGCTAGCAGCTGAAGGGCATGATCTCTCACACCCGGTTGACCTTAAAGACCATTGGGCCAAACATGGTACAAATCGATATATCACAATAAAGTAG 1032 0.4535 MDDRENGRHKADQYKSAQGQWLMQQHQHQHPSMKQIMAIMAERDAAIQERNLAISEKKAALAERDMAFLQRDTAIAERNNALMERDNAIATLQFRENALANGGMSSCPPGCQISRGVKHIHHLPQQQQVNHLPTMGDPSYGTRELHTTNALPEAPIPSEVGKPPRRAKRPKENKSVSPNKKTPKTTRKVKKEGEDLNKTMFANDEALEWKSSQEIINGGDDLNKQLPVSKADWKPQDFALNQVAYDDSTMPAPVCSCTGVLRQCYKWGNGGWQSACCTTNLSVYPLPAVPNKRHARVGGRKMSGSAFNKLLSRLAAEGHDLSHPVDLKDHWAKHGTNRYITIK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3845 343 MobiDBLite consensus disorder prediction 137 194 - -
Tpr1g3845 343 SMART GAGA_bind_2 1 343 IPR010409 -
Tpr1g3845 343 MobiDBLite consensus disorder prediction 162 178 - -
Tpr1g3845 343 Pfam GAGA binding protein-like family 1 343 IPR010409 -
Tpr1g3845 343 Coils Coil 52 72 - -
Tpr1g3845 343 MobiDBLite consensus disorder prediction 17 32 - -
Tpr1g3845 343 MobiDBLite consensus disorder prediction 1 32 - -
Tpr1g3845 343 PANTHER - 3 343 IPR010409 -
Tpr1g3845 343 PANTHER PROTEIN BASIC PENTACYSTEINE6 3 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3845 Tpr-Chr1 42470889 42474612 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3845 66 343 BBR or BPC Transcription factor family AT5G42520 61.301 2.04e-115 334
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BBR-BPC Tpr1g3845 GAGA_bind 4.4e-107 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3845 - - mtr:MTR_1g023660 642.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3845 1 42470889 42474612 Tpr1g3845 1 42470889 42474612 ECH