Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3840 ATGGATTTGGTGAATGTTTTTCACAAGTGTGCGGTGTGCCTTGAGGGCAGTTCACTTTTGCTATTTGATCGGAAGGTTACGCGATACTTTAGAAAGGATGGTCATAATTGGAGGAAGCAAAAAGATGGAAAAACTGTCAGGGAAGCTCATGAAAGACTAAAGGTTTTAGTTCACGGTCAAACTGGAGAGGAGGTTAAGTTGGAGTTGATCCTGCGAGTTGTAGCTGATGTTGGTTTGATTGGACTTCCAAATGCTGGGAAATCAACACTTCTGGCAGCCATTACACTTGCAAAACCCGATATTGCCAGTTATCCTTTTACAACATTAATGCAAAATCTTGGTCGCCTTGCTGGTGATCCCAACTTGGGAACAGGGATGTATTCATCTGAAGCAACATTAGCAGATTTGCCTGGTCTTATAGAAGGCACTCACTTGGGAAAGGGTCTTGGTCGCAAATTTTTGAGGCATCTAAGGAGAACCCGGCTATTGGTCCATGTTGTTGATGCATCTAATAAAAACACTGTAAATGACTACAGAACTGTCAGAGAAGAGTTGCGCATGTATAACCCCAAGTACCTCGAACGACCATACATTGTTGTTTTGAATAAGATTGACCTGCCAGAGGTTATAGATAGGCTTCCAACATTGACTCAAGAAATTCAAAGAATTGGCAGTGATGGTGCAGCTTCTGAACCAAAACCAAGCTCTGAAGTTTCTGCTCAATTATTGTCCGATGAAAATGATACAAAGGAAAAAACACTTGAGGATTATCCGCGACATCACTCTGTTATTGGAGTTAGTGTTATGTAA 810 0.4148 MDLVNVFHKCAVCLEGSSLLLFDRKVTRYFRKDGHNWRKQKDGKTVREAHERLKVLVHGQTGEEVKLELILRVVADVGLIGLPNAGKSTLLAAITLAKPDIASYPFTTLMQNLGRLAGDPNLGTGMYSSEATLADLPGLIEGTHLGKGLGRKFLRHLRRTRLLVHVVDASNKNTVNDYRTVREELRMYNPKYLERPYIVVLNKIDLPEVIDRLPTLTQEIQRIGSDGAASEPKPSSEVSAQLLSDENDTKEKTLEDYPRHHSVIGVSVM* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3840 269 PANTHER DEVELOPMENTALLY REGULATED GTP-BINDING PROTEIN-RELATED 36 240 IPR045086 GO:0003924|GO:0005525
Tpr1g3840 269 ProSiteProfiles OBG-type guanine nucleotide-binding (G) domain profile. 75 269 IPR031167 GO:0005525
Tpr1g3840 269 TIGRFAM small_GTP: small GTP-binding protein domain 76 219 IPR005225 GO:0005525
Tpr1g3840 269 Pfam 50S ribosome-binding GTPase 76 203 IPR006073 GO:0005525
Tpr1g3840 269 Pfam CG-1 domain 16 55 IPR005559 GO:0003677
Tpr1g3840 269 ProSiteProfiles CG-1 DNA-binding domain profile. 1 103 IPR005559 GO:0003677
Tpr1g3840 269 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 76 217 IPR027417 -
Tpr1g3840 269 SMART CG_1_2 6 74 IPR005559 GO:0003677
Tpr1g3840 269 Gene3D - 75 263 IPR027417 -
Tpr1g3840 269 PRINTS GTP1/OBG GTP-binding protein family signature 77 97 IPR006073 GO:0005525
Tpr1g3840 269 PRINTS GTP1/OBG GTP-binding protein family signature 98 116 IPR006073 GO:0005525
Tpr1g3840 269 PRINTS GTP1/OBG GTP-binding protein family signature 133 148 IPR006073 GO:0005525
Tpr1g3840 269 PRINTS GTP1/OBG GTP-binding protein family signature 150 168 IPR006073 GO:0005525
Tpr1g3840 269 MobiDBLite consensus disorder prediction 224 257 - -
Tpr1g3840 269 PANTHER GTP-BINDING PROTEIN OBGC2-RELATED 36 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3840 Tpr-Chr1 42432900 42437786 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3840 18 55 CAMTA Transcription Factor Family AT5G64220 86.842 1.88e-16 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3840 - - aprc:113846583 344.739