Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3827 ATGGTGGCTGGCTTATTGATCACAGTGCCATATTTCCCATTTCATCATTTATTTATTTGTTTATTCATCAAACCAATCAAATTCAACTTTTCACAAAGTTTTCTTCTTTCTCTTCTCAACACTCTTCTAACTTGTAGCAAAATAGTAGCAATGAAGATCCAATGTGACGTTTGTAGCAAAAACGAAGCTTCATTATTCTGCACCGCCGATGAAGCCGCCCTCTGCACTGACTGTGACCACCGTGTCCACCATGCAAACAAGCTAGCTTCCAAACACCACCGTCTCTCTCTTCATAATCCTTCTCCTAAACAACACCCTCTATGTGATATTTGCCAGGAGAGAAGAGCTTTTGTGTTGTGTAAGCAAGATAGAGCAATTCTATGCAAAGATTGTGATTCATCAATTCATTCTGTAAATGAACTTACAGAGAAACATGATAGGTTTCTTCTCACTGGTGTTAAGCTTTCAACTACAAACTCTTCTTCTTCATCATCATCAACAACAACATCAACAAAACCTTCTTCAGCTATTTCCATTTCCAAGTCAATTGTTGTTCCTTCATCTTCTTCTTCTTTGGTTGATAAATCTACTACTCCTTCACCAAAATCTGTGGAAGATGGAAGTGGTGGTTCTACTATTTCTCAGTACTTGATTGAGACTTTACCTGGTTGGCAAGTTGATGACTTTCTTGATTCTTCTTCTGCTCCCTTTGCTTTCTATAAGGGTGATGAATCATTTGAAGAAAATCTTGATTCATTTTTTCCAAATAATAATTTGGGGATCTGGGTTCCTCAAGCACCACCACCTTCTCTATTTTCTTCTTCACAAATCATGATGGGACAGAGTGAGACCAAGAAGGGGAGCAGCAACAACAAAAGCCACATGAACAAATCAAGGTTGAGGGATGATGGGAATAATATTTTCACAGTTCCACAAATTAGTCCTGTTTCCAATCCCAAGAGAACAAGATATCTATGGTAG 981 0.3833 MVAGLLITVPYFPFHHLFICLFIKPIKFNFSQSFLLSLLNTLLTCSKIVAMKIQCDVCSKNEASLFCTADEAALCTDCDHRVHHANKLASKHHRLSLHNPSPKQHPLCDICQERRAFVLCKQDRAILCKDCDSSIHSVNELTEKHDRFLLTGVKLSTTNSSSSSSSTTTSTKPSSAISISKSIVVPSSSSSLVDKSTTPSPKSVEDGSGGSTISQYLIETLPGWQVDDFLDSSSAPFAFYKGDESFEENLDSFFPNNNLGIWVPQAPPPSLFSSSQIMMGQSETKKGSSNNKSHMNKSRLRDDGNNIFTVPQISPVSNPKRTRYLW* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3827 326 Gene3D Classic Zinc Finger 50 145 - -
Tpr1g3827 326 SMART bboxneu5 103 150 IPR000315 GO:0008270
Tpr1g3827 326 SMART bboxneu5 50 97 IPR000315 GO:0008270
Tpr1g3827 326 MobiDBLite consensus disorder prediction 190 209 - -
Tpr1g3827 326 CDD Bbox1_BBX-like 107 150 - -
Tpr1g3827 326 CDD Bbox1_BBX-like 55 97 - -
Tpr1g3827 326 ProSiteProfiles Zinc finger B-box type profile. 103 150 IPR000315 GO:0008270
Tpr1g3827 326 ProSiteProfiles Zinc finger B-box type profile. 50 97 IPR000315 GO:0008270
Tpr1g3827 326 MobiDBLite consensus disorder prediction 281 301 - -
Tpr1g3827 326 Pfam B-box zinc finger 104 146 IPR000315 GO:0008270
Tpr1g3827 326 Pfam B-box zinc finger 53 94 IPR000315 GO:0008270
Tpr1g3827 326 PANTHER B-BOX ZINC FINGER PROTEIN 19 51 323 - -
Tpr1g3827 326 PANTHER B-BOX ZINC FINGER PROTEIN 22 51 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3827 Tpr-Chr1 42293108 42295003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3827 51 326 C2C2-CO-like Transcription Factor Family AT1G75540 45.045 1.13e-72 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Tpr1g3827 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3827 - - lja:Lj5g3v0165540.1 311.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3827 1 42293108 42295003 Tpr1g3827 1 42293108 42295003 ECH
Tpr1g3827 1 42293108 42295003 Tpr7g0076 7 605412 606947 PCT