Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3814 ATGGCTTTGACTGTTGATAATCGTAATATGTTTTCAAACATTGATGAAATCAACTCTGATAGAGCAACTTGGAATTTTCAGGCTAAGGTCATAAGACTTTGGCAAGTGAATGATTTTAATCGAGTTAATGTTCCTTTTTCTATTGAAATGGTGTTAATGGATTCAGATGGTGCTAAGATTCATGCCACTATTAAAAAAACTCTGATTTACAAATTTAAACATGAGTTAATCGAGGGAAAAGTTTATTCTTTTGAAAATCTTGGTGTGGCAGCTAATACTGGAGCTTATAGGACAACACATCATCCCTACAAACTGAACTTTCAGTTTGGCTCATTGGTTCAGAGGCTGTCCAACTGTGATATTTTGAAGTCTCCATTTACCTTTGTTCCGATTGCTGATATTTTGGGGGGTTGTTATGACACTGATTTTTTACTTAGTCAGTTTCATTCTATACATTTTAATTCAGGTTTTGATGTGTTTATTAAGCTATTAACACTACACTTTTTTAAATACTTGATGTCAGATGTTATTGGTTTCTTGACTGAGATTGGGCAAGAACGTGAGATCACTAATCAGAATGGTAGTACAACGAAGCTGAATGTCATTGCATTGGAAGCTGATGGGCATAAGCTTCAATGTACACTTTTTGGTCCATATGTTGATGAACTTAATACCTTTGTTGGAGCTGGTGATCTAACCAATGCTGTGGTTATTGTTCAGCTTGCTAAGGCTAAGATCTTCCAAGACAAGATACATATCCAGAATTGCATGAATTGTTCTGTTTTGATATTTAACCCAACTTGTGACGAAAGTGTAGCCTTAAGGGCAAGTCTCAATGGTTCTGATGAGAATCCGTCTCCATTGACCTTTACTCAAGTTAGCACAGAGTCAAGTGTTCAACCACTTGATGAGTTTCTGCACATTACTCCAAGGATTACCTTGCAAGGTCTCAAGGATGCTACAACTGAATCATCACATGTTGTTGCTGCAACTGTTAAGAGGACTTTAAATCCCAATAGTTATTGGTATACATCATGTTTGTGCGGCAAGGCTGTTGTGCCGGATTCAAAGATGTGGTATTGTGAAAAGTGTAACAGGCATGTTTCAAAGGTTGTTCCTAGGTTTTGTGTCAAAGTCAGAGTCATGGATGATACTGATTCTGCCATTTTTGTGATCTTTGACAAGGAAGCAAGTTCCATATTCAATATGTCTTGTGCTGATATGGTTCGAAATGGAGAAAATGATGTTGGTGAAAGAATTGTTCCACCTCAAATTGATGAGACACTGATTGATCAAACTTGGCTTTTTAAAGTTGAAGCTAAACCTTTTCAGAATCCTAGGTTTGAGCAATCTTTCCGTGTAAGAAAGATTTGTACTGATGAGGGTATAATTAAGCAATTTAAGGACAAGTGGGATAATGAGGATGCTGTGTATCTTAAAAATACAAATGAGGGTGGATCTTTGAGTACTTTGCTGGAAAAGGGGAAAGATGATTATGTAGTTGGGTCGTCAAACGTCCTTTCTGAGGAGTTTGAAAACTTTAGTGGAGATTCTGACAAGGCAAAAGGTTTGATTGTTGAGCGGTCAACTGTTGACGTATCACAAGATTTGATGATTAAATTTTCATCAGCTGTTGTTAATCTTGGCGATGATTTTGATAATACTCCTCTTTGTATTAAGCCAAATACATCCTCTAAGGTGAAACATATTTCATCTGCTGCTGTTGTCAACCCGAATACCGTTGTTGATGGTGTGAAGCCAATTCAACCTGATGATAATGCAAAGCCAATCAACTCTTCTGGATCTGTGAATCGAATCAACTCTGCTGGAGCTGCGAAGTCTCAACAATCTGCTGCTGTTCTTGATGATTTGAGCCAGACAGCTTCAGCCTCTGTTAGGCCATCTGGACAGCGAAAGAAAATTGTTCCTAAGAGAGTGTCCCCTCAACATGAAGATCGAGATGTTGAAGATGAAAATGCTCCTATCAAGTTGTTGAAAAGGGCGGTGAAGATTGAGAAGATTTAA 2025 0.3778 MALTVDNRNMFSNIDEINSDRATWNFQAKVIRLWQVNDFNRVNVPFSIEMVLMDSDGAKIHATIKKTLIYKFKHELIEGKVYSFENLGVAANTGAYRTTHHPYKLNFQFGSLVQRLSNCDILKSPFTFVPIADILGGCYDTDFLLSQFHSIHFNSGFDVFIKLLTLHFFKYLMSDVIGFLTEIGQEREITNQNGSTTKLNVIALEADGHKLQCTLFGPYVDELNTFVGAGDLTNAVVIVQLAKAKIFQDKIHIQNCMNCSVLIFNPTCDESVALRASLNGSDENPSPLTFTQVSTESSVQPLDEFLHITPRITLQGLKDATTESSHVVAATVKRTLNPNSYWYTSCLCGKAVVPDSKMWYCEKCNRHVSKVVPRFCVKVRVMDDTDSAIFVIFDKEASSIFNMSCADMVRNGENDVGERIVPPQIDETLIDQTWLFKVEAKPFQNPRFEQSFRVRKICTDEGIIKQFKDKWDNEDAVYLKNTNEGGSLSTLLEKGKDDYVVGSSNVLSEEFENFSGDSDKAKGLIVERSTVDVSQDLMIKFSSAVVNLGDDFDNTPLCIKPNTSSKVKHISSAAVVNPNTVVDGVKPIQPDDNAKPINSSGSVNRINSAGAAKSQQSAAVLDDLSQTASASVRPSGQRKKIVPKRVSPQHEDRDVEDENAPIKLLKRAVKIEKI* 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3814 674 CDD RPA1_DBD_A_like 27 113 - -
Tpr1g3814 674 CDD RPA1_DBD_B_like 175 266 - -
Tpr1g3814 674 MobiDBLite consensus disorder prediction 620 659 - -
Tpr1g3814 674 Gene3D - 297 460 IPR012340 -
Tpr1g3814 674 MobiDBLite consensus disorder prediction 620 634 - -
Tpr1g3814 674 Gene3D - 9 115 IPR012340 -
Tpr1g3814 674 SUPERFAMILY Nucleic acid-binding proteins 173 281 IPR012340 -
Tpr1g3814 674 Pfam Domain of unknown function DUF223 49 142 IPR003871 -
Tpr1g3814 674 PANTHER REPLICATION FACTOR A 1, RFA1 28 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tpr1g3814 674 Gene3D - 120 286 IPR012340 -
Tpr1g3814 674 CDD RPA1_DBD_C 317 441 IPR013955 -
Tpr1g3814 674 Pfam Replication factor-A C terminal domain 329 441 IPR013955 -
Tpr1g3814 674 SUPERFAMILY Nucleic acid-binding proteins 11 117 IPR012340 -
Tpr1g3814 674 SUPERFAMILY Nucleic acid-binding proteins 310 442 IPR012340 -
Tpr1g3814 674 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 412 - -
Tpr1g3814 674 MobiDBLite consensus disorder prediction 644 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3814 Tpr-Chr1 42141056 42144127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3814 14 405 Core DNA Replication Machinery Family AT2G06510 20.732 1.29e-10 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3814 - - mtr:MTR_4g036240 576.63