Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3803 ATGTTTCGTTTGTTCTTATTTGCTTTTATCATTCCCTTTGTGGTGTTGAGAGTTGATGAAGCTAATGCTCAACTTTACAAAACATTTGGAAGACAAATCTTACCTTATTCGACAATATATGTCGATCCATCTGGCCAAGACGGGAGTTTCTTAACTATTCAATCTGCCATCGATTCGATACCTTCTCATAATGATCGCTGGATTGCAATTAGAGTGAAGGCCGGTATTTATAGAGAAAAAATAGGTATTCCAAGGGAGAAACCTTTCATTATATTGAAAGGAGCAGGAAAGAGAAAAACTTTTGTTGAGTGGAATGACCATAGTTCAACTGATCAAAGTCCTACCTTCACATCATTGGCAAATAATACTGTTGTCAGAACCATAAGTTTCAGGAATACATACAACGAAGATAGTAACGGTGTCCATGTAGCTGCTGTAGCTGCAATGATAAGTGGTGATCAGAGCTATTTTTACAGAGTTGGTTTCTATGGTTATCAAGACACTTTGTGGGACGATAGAGGAAGACATTATTACAAGCTTTGTACCATACAAGGTGCAATTGATTTTATCTTTGGTGATGGTCAATCTTTGTTCGAGAGGTGTGCCATATCTGTTATTGGTGGTGGTTTTATAACAGCACAAGGTAGAGATGATGCAAATGATCCAGGAGGTTTTGTTTTCAAAGATTGTGCTGTGTTTGGAAATGCAACAACTTATTTAGGAAGGCCTTGGAGAAAATATGCTAGAGTCTTATTTTATAATTCCAATCTTACCAACATTGTAGAACCTAGTGGTTGGAACACATGGAATTCTGAAGGCAATGAGGGACTAACAACATTTGCAGAGTATGGTAATTTTGGACCTGGTGCTGATACATCCCAGAGAGTGAGTTGGGCTAAGAGTTTGGATTTAGCAACAATTGAACAAATGACAAGTATGAACTTCGTCAACAAACCAGAACAATGGATTGGTTATCAACCATACTAA 987 0.3759 MFRLFLFAFIIPFVVLRVDEANAQLYKTFGRQILPYSTIYVDPSGQDGSFLTIQSAIDSIPSHNDRWIAIRVKAGIYREKIGIPREKPFIILKGAGKRKTFVEWNDHSSTDQSPTFTSLANNTVVRTISFRNTYNEDSNGVHVAAVAAMISGDQSYFYRVGFYGYQDTLWDDRGRHYYKLCTIQGAIDFIFGDGQSLFERCAISVIGGGFITAQGRDDANDPGGFVFKDCAVFGNATTYLGRPWRKYARVLFYNSNLTNIVEPSGWNTWNSEGNEGLTTFAEYGNFGPGADTSQRVSWAKSLDLATIEQMTSMNFVNKPEQWIGYQPY* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3803 328 Gene3D - 35 327 IPR012334 -
Tpr1g3803 328 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 327 - -
Tpr1g3803 328 SUPERFAMILY Pectin lyase-like 35 324 IPR011050 -
Tpr1g3803 328 Pfam Pectinesterase 47 316 IPR000070 GO:0030599|GO:0042545
Tpr1g3803 328 PANTHER PECTINESTERASE 10-RELATED 4 327 - -
Tpr1g3803 328 ProSitePatterns Pectinesterase signature 2. 183 192 IPR033131 -
Tpr1g3803 328 ProSitePatterns Pectinesterase signature 1. 64 83 IPR018040 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3803 Tpr-Chr1 42067729 42073518 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3803 2 275 Carbohydrate Esterase AT2G19150 43.463 1.17e-74 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3803 - - gmx:100819252 415.616