Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tpr1g3782 | ATGTCATTCAAGAGTATAGTGAAGGTGATGAAAGAGGGAATTAGCAACTTGTATAGAATAGTTGTACCATGTTCTTCACCATCACCATCAGCTTCAGCACCACCAAGAACAGAATCATCATCACAAGGCCAGTGGGCTAATTTACCTTCTGAATTACTATTAGACGTAATTCAACGGATAGATGCTAGCGAAACCACCTGGCCATCTCGCCGAGCACTTGTAGCATGTGCCTCGGTTTGTAAAGCGTGGAGAGCAATAACCAAGAGTTTTGTTAGCACACTTGAACAGTGTGGTATCATCACTTTCCCTATATCATTGAAACAGCCTGCTCCACGAGACAATCCCATTCACTGCTACATCAGGAGGGAAAGATATTCATCCACATTTAGTTTATATCTTGGATTGAGCCCACCGACCAACTTTGATAGGAGCAAACTGCTCTTTCATGCAAAGAAGGTCAGAAGAGCAACCGGTGGTACAGAGTTTATAATATCACTGGTTGCTAAGAAGTTTTCTAAAACCAAGAATACATACATTGGCAAGATAAGGACTAATTTTATCGGCACCAAATCCAAGATATATGAACGTCATCCCCCACTTCCATTGAGTCGTAAGATAGCTACAATATCTTATCGATTCTTTGTTCTTCATTCACCTAGTCCGAGGCATATCGAGTGTACAATGCACTTGATTCCTACCTCATCAATCCAAGAAGGAGGAACTGCGCCGACTCCTTTGGAATTTGCCAGTTACCACATTCAGCATGAATCTTCCAAGGGAAAGAAGCCTAAAGTTGTTGAATTTGACTCAACTTGCACCGATTTTGAAAGAGAGCCACTGATTTTGAAAAACAAAGCTCTTACATGGAGCGAACAACTGCAATATTGGCACTTGGATTTCAGTGGACGGGTTACGGTGGATTCGGTGAAGAATTTTCAGCTTGTAGCAGCTGAAGACCCTTGGGAAAAGAAGGTGATATTACAATTTGGGAAAATTGGGGATGACACATTCATGATGGATTATTGGTATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTCGGCAAAAAACCAGATTTTATATGA | 1098 | 0.4153 | MSFKSIVKVMKEGISNLYRIVVPCSSPSPSASAPPRTESSSQGQWANLPSELLLDVIQRIDASETTWPSRRALVACASVCKAWRAITKSFVSTLEQCGIITFPISLKQPAPRDNPIHCYIRRERYSSTFSLYLGLSPPTNFDRSKLLFHAKKVRRATGGTEFIISLVAKKFSKTKNTYIGKIRTNFIGTKSKIYERHPPLPLSRKIATISYRFFVLHSPSPRHIECTMHLIPTSSIQEGGTAPTPLEFASYHIQHESSKGKKPKVVEFDSTCTDFEREPLILKNKALTWSEQLQYWHLDFSGRVTVDSVKNFQLVAAEDPWEKKVILQFGKIGDDTFMMDYWYPLSAFQAFAICLSSFGKKPDFI* | 366 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tpr1g3782 | 365 | SUPERFAMILY | Tubby C-terminal domain-like | 95 | 361 | IPR025659 | - | |
Tpr1g3782 | 365 | Gene3D | Tubby Protein; Chain A | 105 | 359 | IPR025659 | - | |
Tpr1g3782 | 365 | SUPERFAMILY | F-box domain | 42 | 116 | IPR036047 | GO:0005515 | |
Tpr1g3782 | 365 | Gene3D | - | 38 | 94 | - | - | |
Tpr1g3782 | 365 | Pfam | F-box domain | 45 | 91 | IPR001810 | GO:0005515 | |
Tpr1g3782 | 365 | PANTHER | TUBBY-RELATED | 19 | 201 | - | - | |
Tpr1g3782 | 365 | PANTHER | TUBBY-RELATED | 204 | 362 | - | - | |
Tpr1g3782 | 365 | Pfam | Tub family | 106 | 359 | IPR000007 | - | |
Tpr1g3782 | 365 | PRINTS | Tubby superfamily signature | 162 | 178 | IPR000007 | - | |
Tpr1g3782 | 365 | PRINTS | Tubby superfamily signature | 178 | 202 | IPR000007 | - | |
Tpr1g3782 | 365 | PRINTS | Tubby superfamily signature | 282 | 299 | IPR000007 | - | |
Tpr1g3782 | 365 | PRINTS | Tubby superfamily signature | 300 | 316 | IPR000007 | - | |
Tpr1g3782 | 365 | PRINTS | Tubby superfamily signature | 322 | 341 | IPR000007 | - | |
Tpr1g3782 | 365 | PRINTS | Tubby superfamily signature | 343 | 365 | IPR000007 | - | |
Tpr1g3782 | 365 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 204 | 362 | - | - | |
Tpr1g3782 | 365 | PANTHER | TUBBY-LIKE F-BOX PROTEIN | 19 | 201 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tpr1g3782 | Tpr-Chr1 | 41886679 | 41888125 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tpr1g3782 | 37 | 362 | TUB Transcription Factor Family | AT1G47270 | 51.955 | 1.82e-120 | 352 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | TUB | Tpr1g3782 | Tub | 4.9e-69 | CL0395 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tpr1g3782 | K19600 | - | gmx:100796250 | 417.927 |