Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3782 ATGTCATTCAAGAGTATAGTGAAGGTGATGAAAGAGGGAATTAGCAACTTGTATAGAATAGTTGTACCATGTTCTTCACCATCACCATCAGCTTCAGCACCACCAAGAACAGAATCATCATCACAAGGCCAGTGGGCTAATTTACCTTCTGAATTACTATTAGACGTAATTCAACGGATAGATGCTAGCGAAACCACCTGGCCATCTCGCCGAGCACTTGTAGCATGTGCCTCGGTTTGTAAAGCGTGGAGAGCAATAACCAAGAGTTTTGTTAGCACACTTGAACAGTGTGGTATCATCACTTTCCCTATATCATTGAAACAGCCTGCTCCACGAGACAATCCCATTCACTGCTACATCAGGAGGGAAAGATATTCATCCACATTTAGTTTATATCTTGGATTGAGCCCACCGACCAACTTTGATAGGAGCAAACTGCTCTTTCATGCAAAGAAGGTCAGAAGAGCAACCGGTGGTACAGAGTTTATAATATCACTGGTTGCTAAGAAGTTTTCTAAAACCAAGAATACATACATTGGCAAGATAAGGACTAATTTTATCGGCACCAAATCCAAGATATATGAACGTCATCCCCCACTTCCATTGAGTCGTAAGATAGCTACAATATCTTATCGATTCTTTGTTCTTCATTCACCTAGTCCGAGGCATATCGAGTGTACAATGCACTTGATTCCTACCTCATCAATCCAAGAAGGAGGAACTGCGCCGACTCCTTTGGAATTTGCCAGTTACCACATTCAGCATGAATCTTCCAAGGGAAAGAAGCCTAAAGTTGTTGAATTTGACTCAACTTGCACCGATTTTGAAAGAGAGCCACTGATTTTGAAAAACAAAGCTCTTACATGGAGCGAACAACTGCAATATTGGCACTTGGATTTCAGTGGACGGGTTACGGTGGATTCGGTGAAGAATTTTCAGCTTGTAGCAGCTGAAGACCCTTGGGAAAAGAAGGTGATATTACAATTTGGGAAAATTGGGGATGACACATTCATGATGGATTATTGGTATCCTCTCTCCGCTTTTCAAGCCTTTGCAATCTGTTTGAGTAGCTTCGGCAAAAAACCAGATTTTATATGA 1098 0.4153 MSFKSIVKVMKEGISNLYRIVVPCSSPSPSASAPPRTESSSQGQWANLPSELLLDVIQRIDASETTWPSRRALVACASVCKAWRAITKSFVSTLEQCGIITFPISLKQPAPRDNPIHCYIRRERYSSTFSLYLGLSPPTNFDRSKLLFHAKKVRRATGGTEFIISLVAKKFSKTKNTYIGKIRTNFIGTKSKIYERHPPLPLSRKIATISYRFFVLHSPSPRHIECTMHLIPTSSIQEGGTAPTPLEFASYHIQHESSKGKKPKVVEFDSTCTDFEREPLILKNKALTWSEQLQYWHLDFSGRVTVDSVKNFQLVAAEDPWEKKVILQFGKIGDDTFMMDYWYPLSAFQAFAICLSSFGKKPDFI* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3782 365 SUPERFAMILY Tubby C-terminal domain-like 95 361 IPR025659 -
Tpr1g3782 365 Gene3D Tubby Protein; Chain A 105 359 IPR025659 -
Tpr1g3782 365 SUPERFAMILY F-box domain 42 116 IPR036047 GO:0005515
Tpr1g3782 365 Gene3D - 38 94 - -
Tpr1g3782 365 Pfam F-box domain 45 91 IPR001810 GO:0005515
Tpr1g3782 365 PANTHER TUBBY-RELATED 19 201 - -
Tpr1g3782 365 PANTHER TUBBY-RELATED 204 362 - -
Tpr1g3782 365 Pfam Tub family 106 359 IPR000007 -
Tpr1g3782 365 PRINTS Tubby superfamily signature 162 178 IPR000007 -
Tpr1g3782 365 PRINTS Tubby superfamily signature 178 202 IPR000007 -
Tpr1g3782 365 PRINTS Tubby superfamily signature 282 299 IPR000007 -
Tpr1g3782 365 PRINTS Tubby superfamily signature 300 316 IPR000007 -
Tpr1g3782 365 PRINTS Tubby superfamily signature 322 341 IPR000007 -
Tpr1g3782 365 PRINTS Tubby superfamily signature 343 365 IPR000007 -
Tpr1g3782 365 PANTHER TUBBY-LIKE F-BOX PROTEIN 204 362 - -
Tpr1g3782 365 PANTHER TUBBY-LIKE F-BOX PROTEIN 19 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3782 Tpr-Chr1 41886679 41888125 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3782 37 362 TUB Transcription Factor Family AT1G47270 51.955 1.82e-120 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Tpr1g3782 Tub 4.9e-69 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3782 K19600 - gmx:100796250 417.927
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3782 1 41886679 41888125 Tpr1g3782 1 41886679 41888125 ECH