Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3780 ATGAGTTGCAGAATTTTACTTTCACTTCGTTCTTCAAGAATCGCAATCACAAAACTCAAATCAATCACAAATTCCCAATTTTCCACTATTCTCTTCAATCGACTTCCCGTTTCTTCAATCTCCGGTCACCGGAATCTCCATTCGCATTCCTCTGAACTCGGTAACTCGTTAATCGACCCGTCACTAAAAATTCACTTAAACGACAATGCCGCTCACCAAAACGACGATGAAGACGAAACCACGAACGAGTTTCTCTCACGATTCGCTTGGATAATGAGGAAAAAAGTGAAGGAAGTGTATCCTGAATGCGATAAAAGTACTGTAGATGGAATGCTAGTTCTGATTGTTGAAAGAGTTGTTTCAGAAATGGAAAAAGGTGGTGGTGGTGCTGAAAAACCGGTTTTTGATTCAGTTGATTTCAGTGAGGATCTTTGGAAGACTGTGTGGGAGGTTAGTAATAAGGTTTTGGTTGATATGAATAAAGAGAGGAAGAAGGAGAAAATGAAGAGTTTTTTGCAATGTGATGAGGTTAAAGAAATGTGTAGATTCGCCGGTGAAGTTGGTATTCGAGGCAATTTGCTTAGAGAGCTTAGGTTTAAATGGGCACGTGAGAAAATGGAGGAACATGAGTTTTATGAGGATTTGGAGAAATTGAGGAAAGAGGGACAGGTTATTGAAGAAGGAATAAAACATGAAAGTGACACCGAAACAGATGTTGGTGTTCGTGTTGATGGTAATGTTGAGGAGAAGGGTGAGAATAAGGTTGTTGGGCTTCCTAAGAGGAAGGGGAAATTGAAGTTTAAGATTTATGGACTTGATTTATCTGATCCTAAATGGGAACAAGTGGCTGATAGGATTCATGAGGCAGGAGAAGTTCTTTGGCCGAAGGAGGCGAAGCCAATAACTGGGAAATGCAAACAAGTTACCGAGAGAATTCTGGCGTTGAAGGAGGAGGATGGAGATGATAGTTTGTTAACCCTTTTGGCTGAGTGGATAGAGCTTCTGCAGCCTGCTAGGGTTGATTGGTTCAATTTGCTTGAAAGGTTGAAAAACCAGAATTCTCCTTTGTACTTCAAGGTGGCAGAAAAGGTATTGACTGAAGATTCTTTCCAAACAAATATATCTGACTACTCTAGGCTTATTGATATGTATGCTAAAGAGAACCGCATTGATGATACTGAGAGAATGCTTGAGAAGATGAATGAAAATGGTATACAGCCAGATACTTCGATAGCCAGTGTGTTGGTCCACATGTACAGCAAGATAGGTAATCTTGAAGGTGCAGAAGAGGCATTTAAAATCTTGAGTAGCCATGGTTTCCAACCGGACTCCAAAGTTTACAACTCAATGATCATTGCCTACATAAATGCTGGTGAACCTACAAAGGGTGAGACACTGATGAGGCAGATGGAGACAAGAGATATTCAGCCCACAAAGGAAATATACATGGCATTGCTTCGATATTATTCTCAATGTGGTGACTTTGATCGTGCCTCGCGAACTTCTACATCTATGCAATTTGCAGGACACCAGCAGACTCTGGAAACATGCACCCTGCTTATTGAAGCAGCTGCAGCTGCAGTTGACTGTCACGTAGAAAAGGTAAGCTCCAATTTTGACCACATGGTACAACTTGGGCATAAGCCTAACGATAGGTGCGCTGCTGCCATGATTCGTGCTTATGAGAGGACAAATTCATTAGACAAGGCATTGGATCTTCTTTTAACGTTAGAGAAGGATGGGTTTGAGCCTGGGGTTGCAACTTATTCTGTTCTTATGGAATGGATGGCTAAAATGCAGCTTGTCGATGAGACTGAACAGATTTTAAACAAAATTGCTCTGCTGGGTGAAGCTCCTCCTTTTAGGGTTCAAGTTAGTCTCTGTGATATGTATGCAAGGACTAAAATGGAGAGAAAGGCTCTTCAAACCCTAGGTGTTCTGATAGCTAGGAAGGACGAATTACGAGAACGTCAGTTTGAGAGGATTATAACCGGCCTTATTAGTGGTGGATTTTTGCGGGATGCACAAAGAATGCACGAGATCATGGAATCACAGGGTTTCAAAGCATCTGGACTGCTTATTTCAGCCCTTAAATCTGGCGACTTACCTTGCAGTATGAGGTAA 2124 0.4162 MSCRILLSLRSSRIAITKLKSITNSQFSTILFNRLPVSSISGHRNLHSHSSELGNSLIDPSLKIHLNDNAAHQNDDEDETTNEFLSRFAWIMRKKVKEVYPECDKSTVDGMLVLIVERVVSEMEKGGGGAEKPVFDSVDFSEDLWKTVWEVSNKVLVDMNKERKKEKMKSFLQCDEVKEMCRFAGEVGIRGNLLRELRFKWAREKMEEHEFYEDLEKLRKEGQVIEEGIKHESDTETDVGVRVDGNVEEKGENKVVGLPKRKGKLKFKIYGLDLSDPKWEQVADRIHEAGEVLWPKEAKPITGKCKQVTERILALKEEDGDDSLLTLLAEWIELLQPARVDWFNLLERLKNQNSPLYFKVAEKVLTEDSFQTNISDYSRLIDMYAKENRIDDTERMLEKMNENGIQPDTSIASVLVHMYSKIGNLEGAEEAFKILSSHGFQPDSKVYNSMIIAYINAGEPTKGETLMRQMETRDIQPTKEIYMALLRYYSQCGDFDRASRTSTSMQFAGHQQTLETCTLLIEAAAAAVDCHVEKVSSNFDHMVQLGHKPNDRCAAAMIRAYERTNSLDKALDLLLTLEKDGFEPGVATYSVLMEWMAKMQLVDETEQILNKIALLGEAPPFRVQVSLCDMYARTKMERKALQTLGVLIARKDELRERQFERIITGLISGGFLRDAQRMHEIMESQGFKASGLLISALKSGDLPCSMR* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3780 707 Gene3D Tetratricopeptide repeat domain 528 620 IPR011990 GO:0005515
Tpr1g3780 707 Gene3D Tetratricopeptide repeat domain 435 527 IPR011990 GO:0005515
Tpr1g3780 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Tpr1g3780 707 Coils Coil 383 403 - -
Tpr1g3780 707 Pfam Pentatricopeptide repeat domain 540 596 IPR002885 -
Tpr1g3780 707 Gene3D Tetratricopeptide repeat domain 314 434 IPR011990 GO:0005515
Tpr1g3780 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Tpr1g3780 707 PANTHER OS07G0661900 PROTEIN 8 693 IPR044657 -
Tpr1g3780 707 Pfam Pentacotripeptide-repeat region of PRORP 385 497 IPR033443 -
Tpr1g3780 707 PANTHER PROTEIN NUCLEAR FUSION DEFECTIVE 5, MITOCHONDRIAL 8 693 - -
Tpr1g3780 707 TIGRFAM PPR: pentatricopeptide repeat domain 377 409 IPR002885 -
Tpr1g3780 707 TIGRFAM PPR: pentatricopeptide repeat domain 446 478 IPR002885 -
Tpr1g3780 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Tpr1g3780 707 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3780 364 702 Glycosyltransferase AT1G05670 20.588 6.80e-20 92.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3780 - - gmx:100794017 807.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3780 1 41877698 41880584 Tpr1g3780 1 41877698 41880584 ECH