Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3766 ATGTTTAATCTATGGGGTAGTACTCAACAAGACGAGAAAACCAAAGAGGCTTATGCTGAAACCAAGATTAACGAGCTCAAGGTAGCAATTGGACCCTTATCAGGGCACAGCTTAAAGTACTGCACCGATGCTTGTTTAAGGCGATATTTGGAAGCTCGGAATTGGAATGTCGACAAGTCAAAGAAGATGTTAGAAGACACACTCAAGTGGAGATCAGTCTACAAGCCTGAGAAAATTCGATGGGATGAAGTTGCAGAGGAAGGGGAGACAGGGAAAGTTTATAGAGCCGGATTTCACGACAGACAAGGAAGGACTGTTCTTATTTTAAGACCTGGAATGCAGAACACTTCTTCATTGGACAATCAAATTAAGCATCTTGTGTATCTATTGGAAAATGCTATGCTTAATCTTCCACCAGGTCAAGAACAAATGGCTTGGTTGATAGACTTCACTGGCTGGTCAATTACCAACAATGTTCCCCTCAAATCAGCCAGAGAGACCATCAGTATTCTACAGAATCACTATCCTGAGAGGCTTGGCATAGCATTTCTTTATAACCCTCCTCGAATTTTTGAAGCGTTTTGGAAGATAGTGAAGTATTTCTTGGATAACAAGACATTTCAGAAGGTGAAATTTGTGTACCCTAAGAATAAAGATAGTGTTGAGCTAATGAGTTCTTACTTTGATGAGGAAAATCTTCCAAGTGAACTAGGTGGAAAAAGCAAATTGAACTATAACCATGAGGAATTTTCCAAAATAATGGTTCAGGATGATTTGAAATGTGCAGACTTTTGGGGTTCTGATGATAAGCTCTCAAACCATAGGCATTGTTCAGCAGAGGTAGCTCCAGAACCAGTTTGCAATGAAACTCCAGCCACATGA 882 0.4025 MFNLWGSTQQDEKTKEAYAETKINELKVAIGPLSGHSLKYCTDACLRRYLEARNWNVDKSKKMLEDTLKWRSVYKPEKIRWDEVAEEGETGKVYRAGFHDRQGRTVLILRPGMQNTSSLDNQIKHLVYLLENAMLNLPPGQEQMAWLIDFTGWSITNNVPLKSARETISILQNHYPERLGIAFLYNPPRIFEAFWKIVKYFLDNKTFQKVKFVYPKNKDSVELMSSYFDEENLPSELGGKSKLNYNHEEFSKIMVQDDLKCADFWGSDDKLSNHRHCSAEVAPEPVCNETPAT* 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3766 293 CDD SEC14 89 240 IPR001251 -
Tpr1g3766 293 PANTHER RANDOM SLUG PROTEIN 5-LIKE 18 292 - -
Tpr1g3766 293 SUPERFAMILY CRAL/TRIO N-terminal domain 17 83 IPR036273 -
Tpr1g3766 293 Pfam CRAL/TRIO domain 89 239 IPR001251 -
Tpr1g3766 293 Pfam CRAL/TRIO, N-terminal domain 40 66 IPR011074 -
Tpr1g3766 293 Gene3D - 5 270 IPR036865 -
Tpr1g3766 293 SUPERFAMILY CRAL/TRIO domain 81 256 IPR036865 -
Tpr1g3766 293 PANTHER GH16843P 18 292 - -
Tpr1g3766 293 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 81 245 IPR001251 -
Tpr1g3766 293 SMART CRAL_TRIO_N_2 42 67 IPR011074 -
Tpr1g3766 293 SMART sec14_4 87 242 IPR001251 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3766 Tpr-Chr1 41753905 41757335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3766 46 234 Acyl Lipid Metabolism Gene Families AT1G55840 27.488 1.18e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3766 - - aprc:113847293 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3766 1 41753905 41757335 Tpr1g3766 1 41753905 41757335 ECH