Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3744 ATGATGGCCTTCAATCTAAACTCAAAATCCTCTCTTCTCTTCAACATGTTTATCCTATTATTAGGTAATTTAGCATATGCTACAAAGTTTACCATAGAAAACCAATGTAGTTACACAATTTGGCCGGGAACTCTTTCCGGCAACGGTGCTGCAGTTCTCGGTCAAGGTGGTTTTTCGCTAGCCCCTGGTGCATCAGTTGACTTGACTGCACCATCAGGCTGGTCTGGACGCTTTTGGGGCCGTACTGGCTGCAACTTTGATGGTGCGGGCAGTGGAAAATGTGTCACCGGAGATTGTCCCGGTGGATTAAAATGTACCGGAGGAGGTACTCCACCGGTGACATTGGTTGAATTCACTATCGGATCAGCTAGTAACGGCAACAAGGATTTCTATGATGTGAGCTTGGTTGACGGTTACAATGTGGGAATGGGTGTATCGGCTACCGGAGGAACCGGTGATTGTCAATATGCGGGATGTGTTACTGATTTAAATGGTGCTTGTCCAGCGGAGCTTAAGGTGAACAGTGGTAGTTCCGTGGTGGCATGTAAGAGTGCGTGTTTGGCTTTTAATACGGAGGAGTTTTGTTGCACTGGCGCACATGCCACGCCGCAGACATGTTCGCCGACACATTATTCCGAGATATTTAAGACAGCCTGTCCAACTGCTTACAGTTATGCTTATGATGATGCTTCAAGCACTTGCACATGTTCTGGATCCGATTACCGTATCACGTTTTGCCCCAAAAGATCATCCTGA 756 0.4696 MMAFNLNSKSSLLFNMFILLLGNLAYATKFTIENQCSYTIWPGTLSGNGAAVLGQGGFSLAPGASVDLTAPSGWSGRFWGRTGCNFDGAGSGKCVTGDCPGGLKCTGGGTPPVTLVEFTIGSASNGNKDFYDVSLVDGYNVGMGVSATGGTGDCQYAGCVTDLNGACPAELKVNSGSSVVACKSACLAFNTEEFCCTGAHATPQTCSPTHYSEIFKTACPTAYSYAYDDASSTCTCSGSDYRITFCPKRSS* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3744 251 PANTHER OS03G0233200 PROTEIN 24 247 IPR001938 -
Tpr1g3744 251 CDD TLP-PA 29 246 - -
Tpr1g3744 251 Pfam Thaumatin family 34 247 IPR001938 -
Tpr1g3744 251 SMART tha2 30 247 IPR001938 -
Tpr1g3744 251 ProSiteProfiles Thaumatin family profile. 27 247 IPR001938 -
Tpr1g3744 251 PIRSF PR5 1 251 IPR001938 -
Tpr1g3744 251 SUPERFAMILY Osmotin, thaumatin-like protein 29 248 IPR037176 -
Tpr1g3744 251 Gene3D Thaumatin 28 247 IPR037176 -
Tpr1g3744 251 PANTHER PATHOGENESIS-RELATED PROTEIN 5 24 247 - -
Tpr1g3744 251 PRINTS Pathogenesis-related protein signature 29 41 IPR001938 -
Tpr1g3744 251 PRINTS Pathogenesis-related protein signature 77 88 IPR001938 -
Tpr1g3744 251 PRINTS Pathogenesis-related protein signature 90 119 IPR001938 -
Tpr1g3744 251 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Tpr1g3744 251 ProSitePatterns Thaumatin family signature. 90 105 IPR017949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3744 Tpr-Chr1 41528374 41529573 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3744 11 247 Receptor kinase-like Gene Family AT5G38280 45.714 5.78e-62 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3744 - - gmx:100807814 434.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3744 1 41528374 41529573 Tpr1g3744 1 41528374 41529573 ECH