Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3735 ATGAGAAGGGAACAATCTCAGTCGTCTTGCATGACAGATGCGGAGCCTGATATAATTAGTAGCTTACCGGGTCATATAATAGACCACATTCTCTCACATTTGTCGATTAAAGAAGCAGTGAGAACAAGTGTTTTATCTACTAAATGGAGGTACAAATGGGCGACACTTCCAAATCTTGTGTTTGATAGCCAATGTATCTCTGAAACTTCCGAAGACCTTTTAGATATCAAGAGCAAGCTTTCAAGAATTATTGATCATGTGCTTTTACTCCATTCTGGGCCAATCAGAAAGTTCAAGCTCTCCCATCGTGAGCTTATTGGTGTGACTGATATTGATCGGTGGACTCTTCATCTAACTAGAAGGCCTGTTAAAGAGTTTGTGCTGGAAATATGGAAAGGGCAACGCTATAAGATACCTACATGCTTATTTTCTTGTCAAGGTTTACATCATTTGGAATTATTTAACTGCTGGCTTAAACCACCGTCAACATTTCATGGCTTCAGAAACTTGAAGAGTCTTGATTTGCAACATGTTACATTGGCTCAAGATGCTTTTGAAAACTTGATATCCAGTTGCCCTCTGCTTGAACGATTGACGTTGATGAACTTTGATGGTTTCAACCATCTTAATATTCGTTCCCCAAATCTGCAGTTTTTTGACATTGGGGGTAAGTTTGACGATATAAGCTTTGAGAACACTTCTCAATTAGCGGTGGTATCCATTGGTCTGTATGTAAACTTCGAAAGCAATCAAAGTAGATTGCATGGACACTCCAGCAATTTGGTCGAATTTTTAATTTGTCTACCTCGTATACAGAGGCTGGAGATTCAAAGCTATTTTTTGAAGTATTTGGCTATGGGCGTTGTGCCAGTAAAGCTTCCTACACCTTGCATTGATCTAAGTTATCTTTCCATACGCATAAACTTCAACGATTCAAAGGAAATCTCAGCTGCTCTTTGCTTGCTCAGAAACTCACCTAATTTACGGGAATTAGAAATATTGGCACGGCCTGAGGAGCAGCCTGTTCCAATTGCACACCACACATATTGTTGGGAAGAAGTCTGTTTGAGTTGGCCAGTCATGCGAGTGCAACATGTGAGAATAGATGGCATCTCTGGTATCAAACCTGAATTGGACTTCGTCAACTTTCTACTTCAATATTCTCCCGTGCTAGAAAAGATGGCTGTGAAACCTGCTTTAAACACCGGACCAGAGTTGGTGAAAGATCTATTGCGGTTTAGGAGAGCCTCAACACGGGCTGAAGTTACTTACCTGGACTAA 1281 0.4059 MRREQSQSSCMTDAEPDIISSLPGHIIDHILSHLSIKEAVRTSVLSTKWRYKWATLPNLVFDSQCISETSEDLLDIKSKLSRIIDHVLLLHSGPIRKFKLSHRELIGVTDIDRWTLHLTRRPVKEFVLEIWKGQRYKIPTCLFSCQGLHHLELFNCWLKPPSTFHGFRNLKSLDLQHVTLAQDAFENLISSCPLLERLTLMNFDGFNHLNIRSPNLQFFDIGGKFDDISFENTSQLAVVSIGLYVNFESNQSRLHGHSSNLVEFLICLPRIQRLEIQSYFLKYLAMGVVPVKLPTPCIDLSYLSIRINFNDSKEISAALCLLRNSPNLRELEILARPEEQPVPIAHHTYCWEEVCLSWPVMRVQHVRIDGISGIKPELDFVNFLLQYSPVLEKMAVKPALNTGPELVKDLLRFRRASTRAEVTYLD* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3735 426 Pfam F-box domain 19 51 IPR001810 GO:0005515
Tpr1g3735 426 Gene3D - 4 97 - -
Tpr1g3735 426 ProSiteProfiles F-box domain profile. 16 50 IPR001810 GO:0005515
Tpr1g3735 426 Gene3D Ribonuclease Inhibitor 115 344 IPR032675 -
Tpr1g3735 426 SUPERFAMILY F-box domain 16 74 IPR036047 GO:0005515
Tpr1g3735 426 PANTHER F-BOX/RNI/FBD-LIKE DOMAIN PROTEIN 13 394 - -
Tpr1g3735 426 SUPERFAMILY RNI-like 137 333 - -
Tpr1g3735 426 Pfam Leucine Rich Repeat 169 193 IPR013101 -
Tpr1g3735 426 PANTHER F-BOX PROTEIN-LIKE 13 394 - -
Tpr1g3735 426 SMART 9598neu4hmm 354 425 IPR006566 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3735 Tpr-Chr1 41462726 41466151 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3735 5 217 EF-hand Containing Proteins AT5G41840 24.291 6.35e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3735 - - gmx:100782183 677.552
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3735 1 41462726 41466151 Tpr1g3735 1 41462726 41466151 ECH