Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3729 ATGGCTCTGCATATAGTTTCCTTTCTCCTCCTAATCATATTTTTTTCATCAACAAAATTAGCCAATGCTGCAAACAACACACAAAACTTCCACTACTTTTGTAATTTCAACAACAGAGGTAACTATACAGCCAACAGCATCTACCACACAAACCTTAACACCATTTTGTCCACTCTCACTTCCAACACAAAAATCAACAACTACGGTTTCTATAATTTCTCAAACGGCGAAAACACAAACAAAGTAAACGCGATTGGTCTTTGCAGAGGCGATGTTAAACAAAATGAGTGTCTTAGTTGTCTCAAAAGTTCAAGCAACAATCTAACACAGCTTTGTCCAAACCAAAAAGAAGCTATTGGTTGGTATGAAGACGAAAAATGCATGTTACGTTATTCTGACCGATCGATTTTTGGTTTATTGGAAACAGGACCGGCATATTATGCACACAATATGTTAAATGCAAGTGATTTGAGTGAGTTCAATCAAGTTGTCCGCAACTTGCTTGATAATTTGACTAGCAGAGCTTCGTCTGGTGATTCTCGTTTGAAATATGCCGCGGATAGTGCACGCGGTCCTAATGATCAAACTATATATGGTCTTGTTCAGTGTACGCCGGATTTGTCTGAGTCAGATTGCAATTCATGTTTGGTTCAATCTATTGCAATAATACCAATTGATTGTTGTAAAGATAAGATTGGTGGAAGAGTTGTTAGGCCTAGTTGTAACATGAGATTTGAAACATCTTTCCTCTTCTATGATCCTACAACACCACCGTCACCCCCACCACCACCACCACCTCCTTCTCCTCATGCAGGAAAGAGCCACACTATCACTATCATTGCCATAACAGTACCAATTGGTTCTGTTATGGTGCTCATTTTAATCTGCCTCTCTTTAAGAGTAAGGAAGCCAAGCAAAAGGTTTAAAATTGAAGAAGAAAATGAAGATGATGAGATTGAAATTTCTGAGTCATTGCAATTCGACTTTGACACAATAAAAGAGGCAACAGATGACTTTTCTGATTCTAATAAACTTGGAAAAGGTGGATTTGGGACTGTTTACAGAGGTAGACTCCCCAATGGTCAAGAGATTGGTGTCAAAAGGTTGTCAAGGGATTCTGGCCAAGGAGATTTAGAATTTAAGAACGAAGTGCTTTTAGTGGCTAAGCTTCAACACCGAAATTTAGTCAGACTACTCGGTTTTTGTATCGAAGGAAGAGAAAGACTACTTGTATATGAATTTGTTCATAATAAGAGTCTTGATTACTTCATTTTTGATCAAGCTAAGAGAGCCGACTTAAATTGGGAAATGCGCTATAAAATCATTTTAGGTATTGCTCGAGGAATTATTTACCTTCATGAGGATTCTCGGCTACGCATTATCCATCGTGATCTTAAAGCAAGCAACATTCTCTTAGATGAAGAGATGAATCCAAAGATAGCAGATTTTGGAATGGCCAGACTATTTGATGTGGACCAAACTCAGGAAAATACAGATAGAATTGTTGGAACCTATGGATATATGGCACCTGAGTATGCAATGCATGGACAATTTTCAGTGAAGTCAGATGTATTCAGTTTTGGCGTATTGATTCTTGAGATTATAAGTGGCCACAAAAACAGTGGCATTCGTCGTGGTAGTACTACAGAGTATCTACTAAGCTTTGTATGGAGAAACTGGAGGGACGGATCGCCAACAAATATTATAGATCCCACATTAAACAATGATTCAGTGAATGAAATAATGAGATGCATCCACATTGGACTACTATGTGTTCAAGAAAATGCAGCTACTAGGCCAACTATGGCTTCTGTTGTACTAATGCTTAATAGTCATTCTTTCACTCTTTCAATACCTTTAGAACCTGCGTTTTACGTAGAAAGTGGAGCTGAAGACTTTCAAGATTACACGACAAAATCATCAGAGTATAATCCAGTTCAAGGATCAGTAAATGAGGCTTCGATTACAGAGCCATATCCTCGCTAG 1986 0.3822 MALHIVSFLLLIIFFSSTKLANAANNTQNFHYFCNFNNRGNYTANSIYHTNLNTILSTLTSNTKINNYGFYNFSNGENTNKVNAIGLCRGDVKQNECLSCLKSSSNNLTQLCPNQKEAIGWYEDEKCMLRYSDRSIFGLLETGPAYYAHNMLNASDLSEFNQVVRNLLDNLTSRASSGDSRLKYAADSARGPNDQTIYGLVQCTPDLSESDCNSCLVQSIAIIPIDCCKDKIGGRVVRPSCNMRFETSFLFYDPTTPPSPPPPPPPPSPHAGKSHTITIIAITVPIGSVMVLILICLSLRVRKPSKRFKIEEENEDDEIEISESLQFDFDTIKEATDDFSDSNKLGKGGFGTVYRGRLPNGQEIGVKRLSRDSGQGDLEFKNEVLLVAKLQHRNLVRLLGFCIEGRERLLVYEFVHNKSLDYFIFDQAKRADLNWEMRYKIILGIARGIIYLHEDSRLRIIHRDLKASNILLDEEMNPKIADFGMARLFDVDQTQENTDRIVGTYGYMAPEYAMHGQFSVKSDVFSFGVLILEIISGHKNSGIRRGSTTEYLLSFVWRNWRDGSPTNIIDPTLNNDSVNEIMRCIHIGLLCVQENAATRPTMASVVLMLNSHSFTLSIPLEPAFYVESGAEDFQDYTTKSSEYNPVQGSVNEASITEPYPR* 662
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3729 661 MobiDBLite consensus disorder prediction 637 654 - -
Tpr1g3729 661 Pfam Protein tyrosine and serine/threonine kinase 342 607 IPR001245 GO:0004672|GO:0006468
Tpr1g3729 661 ProSiteProfiles Gnk2-homologous domain profile. 142 250 IPR002902 -
Tpr1g3729 661 Gene3D - 27 135 IPR038408 -
Tpr1g3729 661 Gene3D - 144 249 IPR038408 -
Tpr1g3729 661 MobiDBLite consensus disorder prediction 637 661 - -
Tpr1g3729 661 ProSitePatterns Serine/Threonine protein kinases active-site signature. 460 472 IPR008271 GO:0004672|GO:0006468
Tpr1g3729 661 PANTHER CYSTEINE-RICH RECEPTOR-KINASE-LIKE PROTEIN 9 638 - -
Tpr1g3729 661 Gene3D Transferase(Phosphotransferase) domain 1 415 617 - -
Tpr1g3729 661 ProSiteProfiles Gnk2-homologous domain profile. 30 136 IPR002902 -
Tpr1g3729 661 SMART serkin_6 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3729 661 Pfam Salt stress response/antifungal 155 247 IPR002902 -
Tpr1g3729 661 Pfam Salt stress response/antifungal 34 133 IPR002902 -
Tpr1g3729 661 SUPERFAMILY Protein kinase-like (PK-like) 322 609 IPR011009 -
Tpr1g3729 661 CDD STKc_IRAK 345 610 - -
Tpr1g3729 661 Gene3D Phosphorylase Kinase; domain 1 301 414 - -
Tpr1g3729 661 ProSiteProfiles Protein kinase domain profile. 339 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3729 661 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 638 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3729 Tpr-Chr1 41398451 41401053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3729 12 661 Receptor kinase-like Gene Family AT4G21410 51.977 0.0 644
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tpr1g3729 PK_Tyr_Ser-Thr 2.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3729 - - var:108324787 843.188