Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3724 ATGTTCACTACTAATTCATCACACCCTACAATAATGCAAACTTTATTTTCACCTTTGTTAGAACCAGACCTATCCTTAAACATAAGTCCACCTTCTATTTCAGATTCTCAAGTCAAAGAAATGAAAAACTATGATAAAGGATTAAGTACTAAAGCACTTTATAATGATAATATATGTTCAATATCAACTTCTGATTCAGCTAGTAGTGAAAGTGAGTTAAGTCATGAAAATCCCTTTATCTATCATCATCAACATGTACATCATCATGAGCCAACATTGAGATTAGGATTTGGAAACTCAGATTTGATGAATCCACATCATCATAATCATCATCTTCATCGTCATCAAGTACAAGATGTATCAAGAAACTTCAACCATCAACACTTCCAACCTCACATCTATGGTCGCGACTTCAAGCGAAATACAAGAGTTGTTAATGGTGTCAAAAGAAGTGTTAGAGCTCCAAGAATGAGATGGACCACTACCCTTCATTCTCATTTTGTTCATGCCGTTCAACTTCTCGGTGGTCATGAAAGAGCAACTCCAAAATCTGTGTTAGAATTAATGAATGTGAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTACAGATGTATAGAACAGTGAAGACCACTGACAAATCAGGAGCAGGTCATGGTATGGTACAGACACAAGGGATTAATAATATTGTTCCTTTGCATGGAGCTAATTCTTGTGAGAGACCAAATTTACCACAAGACAGGACATGTTGGCAACCATCAAAAGAGACAAATACAAACAATACCTCAGAAAAATCCGAAATTGGTTTGATGTATTCTCATTTCAAGGAAAATGATACCATGGTGAAGAGGTTGGATTCTACCCAATTGTCACATTCCAACTCCATGATTGACTTAGAATTCACACTTGGAAGGCCTAATTGGGAAAAAGACCAAGCTGAATCATCAAGAGAATTAGCTTTTCTTAAGTGTTAA 975 0.3631 MFTTNSSHPTIMQTLFSPLLEPDLSLNISPPSISDSQVKEMKNYDKGLSTKALYNDNICSISTSDSASSESELSHENPFIYHHQHVHHHEPTLRLGFGNSDLMNPHHHNHHLHRHQVQDVSRNFNHQHFQPHIYGRDFKRNTRVVNGVKRSVRAPRMRWTTTLHSHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKTTDKSGAGHGMVQTQGINNIVPLHGANSCERPNLPQDRTCWQPSKETNTNNTSEKSEIGLMYSHFKENDTMVKRLDSTQLSHSNSMIDLEFTLGRPNWEKDQAESSRELAFLKC* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3724 324 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 7 324 - -
Tpr1g3724 324 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 7 324 IPR044847 GO:0000976|GO:0006355|GO:0010158
Tpr1g3724 324 Gene3D - 154 211 - -
Tpr1g3724 324 Pfam Myb-like DNA-binding domain 156 207 IPR001005 -
Tpr1g3724 324 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 155 208 IPR006447 GO:0003677
Tpr1g3724 324 SUPERFAMILY Homeodomain-like 152 208 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3724 Tpr-Chr1 41362984 41372430 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3724 120 230 G2-like Transcription Factor Family AT5G42630 70.085 2.15e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Tpr1g3724 Myb_DNA-binding 1.7e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3724 - - gmx:106795723 355.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3724 1 41362984 41372430 Tpr1g3724 1 41362984 41372430 ECH