Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3723 ATGGGAGGAAGAGGACAAACCAGTGGTAGCAGCAGCAAATCATGGCAGGAAGAAATCTACTGGACCCATTTCCAGTTCATCCATTTCATTCTTTTTCTCCGCAATGATTTTCAGCAACAACTTGCACTTCCGAAAACATTTTCTAACAATGTAAAGAAGAAGTTGCCAGAAAATGTGACCCTTAAGGGTCCAAGTGGAGTGCTGTGGAATATAGGGCTTTCTATTAGAGATGATACTGTTTACTTTGAGGACGGTTGGCAACGATTCGTGAAAGATCATTCTTTGAAAGAGAATGATTTTCTTCTCTTCAAGTATAATGGAGAATCACTGTTTGAGGTTTTCATTTTTGAGGGAGAAAGTAATTGTGAGAAGGCAGCTGCATATTTTGTTGGAAAATGTGATAATGTTAAAGCTGATCAAGGAGGTAGCAAGGCGAAGGATACAAACACTTCTGCTGAAGAAGTAATTACTGCTTCTGATGGTGGAGGTGGGTGCAGATCTTGGGAGGAAGACATTTACTGGACCCATTTTCAATTCATCCATTTCACTCAATTTCTTCGCAATGATTTTGATCAACAACTTGCACTTCCCAAAACGTTTTCAAACAATGTCAAAAAGAAGTTGCCAGAAAATGCGGTCCTAAAAGGTCCTAGTGGAGTTGTGTGGGATATTGAGCTGACAACTAGAGACGGTATTGTGTATTTCATGAACGGTTGGCAACAATTTGTGAAAGATCATTCTTTGAAAGAGAATGATTTCCTTGTGTTTAAGTACAATGGAGAGTCATTGTTTGAGGTTTTAATCTTTGACGGGGAGAGTTTCTGTGAGAAGGCAGCTTCTTATTTTGTTCGAAAATGTGGGCGTGCTGCTGCCAATACCGAACAAGAGACTGCCAATACCGAACAAGGGGTTGGATGTTCTAGCAAGAAAAAGGACACAGATAATTCTGTTGAAGAAGTCAATACTCCTTCGAATGGTGTTGATGAAGGTGTTTCACCTGAAAAATCTTCACATCTAAACAGTATAAGAGTGCCATTTGCTGTACCTGTTGAAACTACCAACGGAAAGACTTCTAATGGTGGTGTTGAATCTGCCTCCCCTGAGCAATTCATAGCCGATGCGATCACCGAGACCGAGCCTGCAGATGCTGCCACTCAGAAAACTAGTAAACGGACAAGGAGGCCTGTTTATACGTCTGCCCCGAGTAAGAAGAGAGGAAGACCACCAGGAAGACCTCCAAAAACATCTAATCCTGATGAGAGAGCTCTTAATTGGGTCACCGATGCTGAGATTTCTCCTAAGGGTTCTCCCAAGGGTTCTCCAAAGGGTAGATCTGCGACACAGGAACTATATACCTCAAATAGAAGGCCTGTCACAAAAACTGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAGCATGTACTGACGAATCCTTGCTTGTAACTATGCGACCTTCACATGTATACAAGAGATTCTTCTTGTCATTCCCAAATAAGTGGATACTAAACCATCTTTCTCCATCATCTCAAGACGTGATATTGCGCATGGGTAAGAATGAATGGCTTGGGAGATACTTGTATCATAATATTCGTAACAATGGAGGACTTACTGGTGGGTGGAAATATTTTGCCCTCGACAATAACCTTGAAGAGTTCGATGTGTGCTTGTTTAAACCAGCTGGTCATATGCATGACTTATTGATCTTAGAAATGAGCATTTTTAGAGTCGTTGAGGAGATTACTCCTCTTTCTGCGGTGCATTCTCCAGGAAAGAAGAGGGGAGTTAAGAGAACCCCGCCTGGTGCTACCCAAAAGGAACATGAGTCCATTGAAGGAAAGAAGAGGGGAGTGAAGAGAACACTGACCAATGGTGTCCAAACAGAACTCGAGTCCATTGAAGGCGCGTAA 1908 0.4214 MGGRGQTSGSSSKSWQEEIYWTHFQFIHFILFLRNDFQQQLALPKTFSNNVKKKLPENVTLKGPSGVLWNIGLSIRDDTVYFEDGWQRFVKDHSLKENDFLLFKYNGESLFEVFIFEGESNCEKAAAYFVGKCDNVKADQGGSKAKDTNTSAEEVITASDGGGGCRSWEEDIYWTHFQFIHFTQFLRNDFDQQLALPKTFSNNVKKKLPENAVLKGPSGVVWDIELTTRDGIVYFMNGWQQFVKDHSLKENDFLVFKYNGESLFEVLIFDGESFCEKAASYFVRKCGRAAANTEQETANTEQGVGCSSKKKDTDNSVEEVNTPSNGVDEGVSPEKSSHLNSIRVPFAVPVETTNGKTSNGGVESASPEQFIADAITETEPADAATQKTSKRTRRPVYTSAPSKKRGRPPGRPPKTSNPDERALNWVTDAEISPKGSPKGSPKGRSATQELYTSNRRPVTKTEIENTLQLAQAACTDESLLVTMRPSHVYKRFFLSFPNKWILNHLSPSSQDVILRMGKNEWLGRYLYHNIRNNGGLTGGWKYFALDNNLEEFDVCLFKPAGHMHDLLILEMSIFRVVEEITPLSAVHSPGKKRGVKRTPPGATQKEHESIEGKKRGVKRTLTNGVQTELESIEGA* 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3723 635 MobiDBLite consensus disorder prediction 377 459 - -
Tpr1g3723 635 MobiDBLite consensus disorder prediction 441 459 - -
Tpr1g3723 635 CDD B3_DNA 482 575 IPR003340 GO:0003677
Tpr1g3723 635 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 164 350 - -
Tpr1g3723 635 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 446 584 - -
Tpr1g3723 635 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 10 165 - -
Tpr1g3723 635 Gene3D - 458 579 IPR015300 -
Tpr1g3723 635 ProSiteProfiles B3 DNA-binding domain profile. 479 577 IPR003340 GO:0003677
Tpr1g3723 635 CDD B3_DNA 28 116 IPR003340 GO:0003677
Tpr1g3723 635 CDD B3_DNA 181 270 IPR003340 GO:0003677
Tpr1g3723 635 Pfam B3 DNA binding domain 481 562 IPR003340 GO:0003677
Tpr1g3723 635 Pfam B3 DNA binding domain 191 270 IPR003340 GO:0003677
Tpr1g3723 635 Pfam B3 DNA binding domain 38 113 IPR003340 GO:0003677
Tpr1g3723 635 SUPERFAMILY DNA-binding pseudobarrel domain 178 270 IPR015300 -
Tpr1g3723 635 SUPERFAMILY DNA-binding pseudobarrel domain 480 565 IPR015300 -
Tpr1g3723 635 MobiDBLite consensus disorder prediction 318 339 - -
Tpr1g3723 635 MobiDBLite consensus disorder prediction 292 343 - -
Tpr1g3723 635 MobiDBLite consensus disorder prediction 292 306 - -
Tpr1g3723 635 Gene3D - 175 275 IPR015300 -
Tpr1g3723 635 Gene3D - 22 122 IPR015300 -
Tpr1g3723 635 ProSiteProfiles B3 DNA-binding domain profile. 26 119 IPR003340 GO:0003677
Tpr1g3723 635 SMART B3_2 26 119 IPR003340 GO:0003677
Tpr1g3723 635 SMART B3_2 182 272 IPR003340 GO:0003677
Tpr1g3723 635 SMART B3_2 479 572 IPR003340 GO:0003677
Tpr1g3723 635 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 164 350 IPR044837 -
Tpr1g3723 635 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 10 165 IPR044837 -
Tpr1g3723 635 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 446 584 IPR044837 -
Tpr1g3723 635 MobiDBLite consensus disorder prediction 588 635 - -
Tpr1g3723 635 SUPERFAMILY DNA-binding pseudobarrel domain 25 117 IPR015300 -
Tpr1g3723 635 MobiDBLite consensus disorder prediction 599 618 - -
Tpr1g3723 635 ProSiteProfiles B3 DNA-binding domain profile. 179 272 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3723 Tpr-Chr1 41321220 41329763 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3723 165 575 REM Transcription Factor Family AT4G33280 32.212 4.23e-59 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3723 B3 1.9e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3723 - - mtr:MTR_1g021500 663.685