Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3722 ATGGTAGGGGTTCGAGGACAACCGACCTATGGTGGAAGCAAATCATGGGAGGAAGACATTTACTGGACCCATTTCCAGTTCATCCATTTCACACAATTTCTCCGCAATGATTTTCATCAACAACTTGCACTTCCCAAAGCATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGTAACCCTTAGAGGTCCTAGTGGAGTTGTGTGGAATGTAGGGCTGACTACTAGAGACGATACCTTGTACTTCACGAACGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAATACAAGGGTGAATCACATTTTGAGGTTTTAATCTTTGATGGAGAAAGCTTATGTGAGAAAACAGCTTCTTATTTTGTCGGAAAATGTGGACATGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGACACAAACACATGTGCTGAAGAAGTCATTAATACTGCTTCGAATGGTGGTGTAGAAACGTTATCAGGTGTACTTTTTGGAACTACCAATGGAAAGACTGGTAATGCTGGTGTCGAACCTGTTTCCCCTGAGAAATTAACGGCTGATGCACTCACTAAGACCACACCTATACAGGTTCCATTCCAACCAACTGGTAAAAGGACTGAGAAGCCTGTTAATGAAGTTATGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAAAAGCGGGTAATTCTTTTGAGAGAGCACATGATTTGGTGGCTTGTAACAAGCAACACTCAGCAGCAGCTATCCTGAATAGAAGTGGGAATGAAGACGAGGAGGAAAAGATAGCCCAACCATTTACCTCCTCTTTTCCATATCTTGTTAAAATAATCAGAACGTGCAATGTCATTAGTTCACGTACTCTGAGAATCCCATATCAGTTCGGTGCTGAACATTTCCCTGCCAGGAGAACAGAAGTTAAGCTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCCATCCCAGATGGTAAAGGAAGAGGAGCTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACTTAAAAGTTGGCGACGCGTGCATTTTTGAGCTAGTTTCTAATTATGTGATGCAGGTTTATATATCTGGTGTTGGAAAGGAAGGTTTTGATCATCAAAATGGGCATGCTAAACTTAATAGCGTATAG 1185 0.4211 MVGVRGQPTYGGSKSWEEDIYWTHFQFIHFTQFLRNDFHQQLALPKAFSNNVKKKLPENVTLRGPSGVVWNVGLTTRDDTLYFTNGWQQFVKDHSLKENDFLVFKYKGESHFEVLIFDGESLCEKTASYFVGKCGHAQTEQGGSKAKDTNTCAEEVINTASNGGVETLSGVLFGTTNGKTGNAGVEPVSPEKLTADALTKTTPIQVPFQPTGKRTEKPVNEVMPVQTKKRGRPPKAGNSFERAHDLVACNKQHSAAAILNRSGNEDEEEKIAQPFTSSFPYLVKIIRTCNVISSRTLRIPYQFGAEHFPARRTEVKLRNSRGECWTVNSIPDGKGRGAHTFCGGWMAFVRDNDLKVGDACIFELVSNYVMQVYISGVGKEGFDHQNGHAKLNSV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3722 394 CDD B3_DNA 29 118 IPR003340 GO:0003677
Tpr1g3722 394 Gene3D - 23 123 IPR015300 -
Tpr1g3722 394 SUPERFAMILY DNA-binding pseudobarrel domain 276 376 IPR015300 -
Tpr1g3722 394 SMART B3_2 282 378 IPR003340 GO:0003677
Tpr1g3722 394 SMART B3_2 30 120 IPR003340 GO:0003677
Tpr1g3722 394 ProSiteProfiles B3 DNA-binding domain profile. 282 378 IPR003340 GO:0003677
Tpr1g3722 394 SUPERFAMILY DNA-binding pseudobarrel domain 26 118 IPR015300 -
Tpr1g3722 394 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 13 389 - -
Tpr1g3722 394 ProSiteProfiles B3 DNA-binding domain profile. 27 120 IPR003340 GO:0003677
Tpr1g3722 394 CDD B3_DNA 280 374 IPR003340 GO:0003677
Tpr1g3722 394 Pfam B3 DNA binding domain 283 367 IPR003340 GO:0003677
Tpr1g3722 394 Pfam B3 DNA binding domain 38 118 IPR003340 GO:0003677
Tpr1g3722 394 Gene3D - 262 377 IPR015300 -
Tpr1g3722 394 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 13 389 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3722 Tpr-Chr1 41315106 41318511 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3722 16 363 REM Transcription Factor Family AT4G33280 36.088 4.11e-57 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3722 B3 3.6e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3722 - - mtr:MTR_1g021435 498.049