Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3720 ATGGATGTCGCACTTCCCAAAACATTTTCAAACAATGTAAAGAAGAAGTTGCCAGAAAATGTGACTCTTAGAGGTCCTAGTCGAGTTGTGTGGAAGGTAGGGCTGACTACTAGAGACGATACCTTGTACTTCACGAACGGTTGGCAACAATTCGTGAAAGATCACTCTTTGAAAGAGAATGATTTCCTTGTCTTTAAATACAAGGGTGAATCACACTTTGAGGATTTAATCTTTGATGGAGAAAGTTTATGTGAGAAAACAGCTTATTTTGTCGGAAAATGTAGACCTGCTCAAACTGAACAAGGGGGTAGCAAGGCAAAGGATACTGCTTCGAATGGTGGTGTAGAAACGCCATTAGTTGTACCTATTGGAACTAACAATGGAAAGACTTGTAATGCTGGTGTTGAATCTGCTTCCCCTGAGAAATTAACGGTTGATGCACTCACTAAGACCACAACTATACAGTTTCCGTTCCAACCAACCGGCAAAAGGGCCGAGAAACCTGTTAATGAAGTTACGCCTGTCCAGACTAAGAAGCGAGGAAGACCACCAACAGCAGGTAATTCTTGTGAGAGAGCACATTCTTGTCAAATATCGATCACGGCGGTGCCATACTTGGATATGACGGTGCCAGCTGTCGACCAGTATGGCGGGTTTTTAGCAGATGACATGGGATTAAGCCCAAAGTATGGAGAGTTTAGAAACAATAAAAGAGAGAATGATGAGGTGGCAAGGAGCGAAAGTCAGGTATCTATCTTGAATAGAAGTGGCAAGGATGATGACCATTATATTCCTAGCAGCGGAGCTTCACTTTCAAGGTCATCAATATGTCATGAGAAAAAGATAGCCCAGTCATATACCTCCACTTTTCCATATTTTGTTAAAATAATCCAAAAGTTCAATGTTGGAGGTTCATGTTTGCTGAATATACCATCTCAATTTTCGAAAGCACACATTCCAAACCGCATAATAAAGATTATTCTACATAATTTGAAGGGAGAACAGTGGACTGTTAATGCTGTTAATATAGATTCTAATGTGTATAGATATCACTCTATACGTGGAGGGTGGATCGATTTCGTTCGTGGCAATGGCATAAAGGTTGGAAATGTCTGCATTTTCGAACTTATGTGTGAGAATGAATTAAGTGTTCGTATCGCTGAGGTTGGAAAAGATGGGCTAGACATCCAGGATGAAAAACTAGATTTTAGTGTGCCTAGTGCAAGACAAGATGTTCGTAAACGAAGGCAGTGGCAAGGATAA 1263 0.4078 MDVALPKTFSNNVKKKLPENVTLRGPSRVVWKVGLTTRDDTLYFTNGWQQFVKDHSLKENDFLVFKYKGESHFEDLIFDGESLCEKTAYFVGKCRPAQTEQGGSKAKDTASNGGVETPLVVPIGTNNGKTCNAGVESASPEKLTVDALTKTTTIQFPFQPTGKRAEKPVNEVTPVQTKKRGRPPTAGNSCERAHSCQISITAVPYLDMTVPAVDQYGGFLADDMGLSPKYGEFRNNKRENDEVARSESQVSILNRSGKDDDHYIPSSGASLSRSSICHEKKIAQSYTSTFPYFVKIIQKFNVGGSCLLNIPSQFSKAHIPNRIIKIILHNLKGEQWTVNAVNIDSNVYRYHSIRGGWIDFVRGNGIKVGNVCIFELMCENELSVRIAEVGKDGLDIQDEKLDFSVPSARQDVRKRRQWQG* 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3720 420 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 4 401 IPR044837 -
Tpr1g3720 420 SMART B3_2 293 390 IPR003340 GO:0003677
Tpr1g3720 420 SMART B3_2 3 81 IPR003340 GO:0003677
Tpr1g3720 420 SUPERFAMILY DNA-binding pseudobarrel domain 4 79 IPR015300 -
Tpr1g3720 420 CDD B3_DNA 5 79 IPR003340 GO:0003677
Tpr1g3720 420 Pfam B3 DNA binding domain 3 73 IPR003340 GO:0003677
Tpr1g3720 420 Pfam B3 DNA binding domain 293 386 IPR003340 GO:0003677
Tpr1g3720 420 PANTHER PLANT-SPECIFIC B3-DNA-BINDING DOMAIN PROTEIN 4 401 - -
Tpr1g3720 420 Gene3D - 1 84 IPR015300 -
Tpr1g3720 420 SUPERFAMILY DNA-binding pseudobarrel domain 288 386 IPR015300 -
Tpr1g3720 420 ProSiteProfiles B3 DNA-binding domain profile. 293 390 IPR003340 GO:0003677
Tpr1g3720 420 CDD B3_DNA 291 386 IPR003340 GO:0003677
Tpr1g3720 420 MobiDBLite consensus disorder prediction 163 190 - -
Tpr1g3720 420 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Tpr1g3720 420 Gene3D - 277 389 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3720 Tpr-Chr1 41299722 41306836 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3720 3 102 REM Transcription Factor Family AT4G33280 52.941 2.66e-27 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3720 B3 8.3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3720 - - mtr:MTR_1g021320 398.282