Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3718 ATGGCTTGTGAGTGTAAGGGAAAGCTAAATGTGAGAAAACCTCAGTTCTATCAGGTCTTTTCCCCTTCTTCTACCTCTCAATCTCTGAGAATTCCAGATGGCTTTGTCCATCAAATGGAGGGCACCACTTGCGGATTAGTTTCATTAACTGGTCCTAGTGGAAATAATTGGCAAGTTCGATTAGTTGAGCAGGACAATTATCTATTCTTCCATCATGGATGGTCAACATTTGTGGGAGATCATCATTTAGAATATGGCGACCTTTTGGTTTTCCGATACGAGGGTCACCTACATTTCACTGTGCAAGTATTTGGTGAGAATGCATGTGAGAAAGAAGCAGCATTTCATACTGAATGCAATCTAAATTCAATCAACTTCGATAATATTGAAGGACAGAAAAGTGACGCTAAGGAGACTTCTTCTTTGGATGTTGTTAGTGATCAGCAGGGTATTGCCGGTAGAGATCTATCTAAGTATGAGGTAGTTAAGCCAATTAGTATGATCAGAGAAAGAGAAGAAACCTACAAAGAATGTTCAACTAGTGCTGTTCCTGTTCCTTTTCACACAGTGAACAGTAATGAAGATCAAGCTTCGCTGTCAATGCTATCAGCACATGATGAGAAAAAGATAGCCCAGTCATTTACCTCCTCTTTTCCATATTTTGTTAAAATAATGAAAACCTTCAATGTCAGTGGTTCATATACTCTGAATATACCATATCAATTTTCGACATCACATCTTCCAAACTGCAAGATAAAGATTATTCTTCATAATTTGAAGGGAGAACACTGGACTGTTAATTCTGTTCCAACAACTAGAGTGCACACAAGTCACACTCTATGTGGAGGATGGATGGCTTTTGTTCGTGGCAATAGCATAAAGGTTGGAGATGTCTGTATTTTCGAACTTATACATGAGTATGAATTACGTGTTCGCATCGCTGAGGTTGGAAAAGATGGGCTAGACTCCCAGGTTGGAAAACTAGCTTATAGTATGCTTACTGCAAGACATGATGTCGCTTGCCACAAGACTTCTAGATATATGTCAAAGAGTCCTAAAGTCAGCTCAAAGTGCAGAAGCAAAGTTGATCAATCAGATAAGTTGTCAAAGATTGGTCAAGACGCTGTTTTATCCATTGACTTAAAGAAGTCCGGTAGAGCTTCAAATACTTCAAAGAAAATGGGGCTTAGCCCCAAGTCGAAAGCTGTCCATAAAAAGCTGGCTGTACCGAGGAAACATCGTGTTGAAGATGAACTAAGCTCCCAGGCTAAAGCTGGTTTGAGAATGTTGTTCGCACTCGACGAGCAAAGAGTAGCTGAAGCTTTTAGTTCCCCATTTCCTAATTTTGTGAAAATCATGAAGAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATATCAGTTCTCTGCTGCACATCTCCCCGCCTACAAAACAGAAGTTACACTTCGCAATTCAAGAGGCGAATGTTGGACTGTGAACTCTGTCCCAGACGCTAAAGGGAGAACAATTCACACCTTTTGTGGGGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGCGACACATGCATTTTTGAGATGGTTTCTCATTATGTGATGCATGTTTATATATCCGGGGTTGGAAAGGAAGGTCTTGACAATCAAAATGGGCATGTGAAAGTTATAGCTAACTAG 1686 0.4015 MACECKGKLNVRKPQFYQVFSPSSTSQSLRIPDGFVHQMEGTTCGLVSLTGPSGNNWQVRLVEQDNYLFFHHGWSTFVGDHHLEYGDLLVFRYEGHLHFTVQVFGENACEKEAAFHTECNLNSINFDNIEGQKSDAKETSSLDVVSDQQGIAGRDLSKYEVVKPISMIREREETYKECSTSAVPVPFHTVNSNEDQASLSMLSAHDEKKIAQSFTSSFPYFVKIMKTFNVSGSYTLNIPYQFSTSHLPNCKIKIILHNLKGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNSIKVGDVCIFELIHEYELRVRIAEVGKDGLDSQVGKLAYSMLTARHDVACHKTSRYMSKSPKVSSKCRSKVDQSDKLSKIGQDAVLSIDLKKSGRASNTSKKMGLSPKSKAVHKKLAVPRKHRVEDELSSQAKAGLRMLFALDEQRVAEAFSSPFPNFVKIMKKFNVSGSYTLKIPYQFSAAHLPAYKTEVTLRNSRGECWTVNSVPDAKGRTIHTFCGGWMAFVRDNDINFGDTCIFEMVSHYVMHVYISGVGKEGLDNQNGHVKVIAN* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3718 561 PANTHER B3 DOMAIN-CONTAINING 424 557 - -
Tpr1g3718 561 PANTHER B3 DOMAIN-CONTAINING 1 424 - -
Tpr1g3718 561 MobiDBLite consensus disorder prediction 385 415 - -
Tpr1g3718 561 Gene3D - 8 109 IPR015300 -
Tpr1g3718 561 CDD B3_DNA 14 104 IPR003340 GO:0003677
Tpr1g3718 561 ProSiteProfiles B3 DNA-binding domain profile. 14 107 IPR003340 GO:0003677
Tpr1g3718 561 SUPERFAMILY DNA-binding pseudobarrel domain 214 314 IPR015300 -
Tpr1g3718 561 ProSiteProfiles B3 DNA-binding domain profile. 449 545 IPR003340 GO:0003677
Tpr1g3718 561 SUPERFAMILY DNA-binding pseudobarrel domain 10 109 IPR015300 -
Tpr1g3718 561 SMART B3_2 16 107 IPR003340 GO:0003677
Tpr1g3718 561 SMART B3_2 449 545 IPR003340 GO:0003677
Tpr1g3718 561 SMART B3_2 221 317 IPR003340 GO:0003677
Tpr1g3718 561 Pfam B3 DNA binding domain 449 533 IPR003340 GO:0003677
Tpr1g3718 561 Pfam B3 DNA binding domain 221 313 IPR003340 GO:0003677
Tpr1g3718 561 Pfam B3 DNA binding domain 19 104 IPR003340 GO:0003677
Tpr1g3718 561 SUPERFAMILY DNA-binding pseudobarrel domain 442 543 IPR015300 -
Tpr1g3718 561 ProSiteProfiles B3 DNA-binding domain profile. 221 317 IPR003340 GO:0003677
Tpr1g3718 561 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 424 557 - -
Tpr1g3718 561 PANTHER B3 DNA-BINDING DOMAIN PROTEIN 1 424 - -
Tpr1g3718 561 CDD B3_DNA 219 313 IPR003340 GO:0003677
Tpr1g3718 561 CDD B3_DNA 447 540 IPR003340 GO:0003677
Tpr1g3718 561 Gene3D - 203 317 IPR015300 -
Tpr1g3718 561 Gene3D - 434 544 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3718 Tpr-Chr1 41278629 41283050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3718 13 327 B3 DNA Binding Superfamily AT3G18990 24.501 1.03e-21 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tpr1g3718 B3 7.9e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3718 - - gmx:100814386 854.744