Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3709 ATGTTTGGATGGACAGAAGACACTCACACTACAACATTAAAGATGAGTTCAATTTTGTCACAAAAAGTACTTTTGTGGTCTTTGATTTTGTTAGTGTACCAATTTTCCATCTCATGCAAAGCCAACCAACAAAGTAAATACCTCTACAAGTTTATTCAATCAAAGAGGTTTCAACAAAAGCCTTCTTCACATGAAGAAGCTTTTTATTTAAGTGCTTTTGTTGATGAACATGTTCCAAATAAGGTACATGTTGAAGAACAATTAAGGTTGATGAAAGCTGATAAGGTGAAGGCTTTGCCTGGACAACCAAAAGGTGTGAATTTTGATCAATATGCTGGCTATGTAACTGTGGATACAAAAGCAGGGAGAGAACTTTTCTATTACTTTGTTGAATCACCTTTAAATTCTTCCACAAAGCCTCTTGTTCTATGGCTAAATGGAGGACCCGGATGCTCTTCATTTGGGTATGGAGCCATGCAAGAATTAGGACCTTTTAGAGTAAACAGTGATGGAAGGACCCTTTCCCTTAATAAAGATGCATGGAGTAATGTGGCAAATGTTATCTTCCTAGAGTCACCAGCAGGTGTTGGATTTTCTTATTCAAACAAAACATCAGATTATTCTAACATTGGTGACAATAGCACAGCCAGAGATTCTTACATTTTTCTTCTAAACTGGCTTGATAGATTTCCACAATATAAGACTCGAGATTTCTTCATAGCTGGTGAAAGTTATGCTGGCCATTATGTTCCTCAGCTAGCTCACCTTATTCTCTCAAATAATAAGAAAATGAAACATCACAGAGTTATCAATTTGAAAGGAATCGCAGTTGGGAACGGCTGGATAGATGACAACTACTGTACAAAGGGAATGTATGACTATTTCTGGATGCAGTCGTTAAACTCTGATGAAACTCATCGAGGAATTGAAAAACTTTGCGACTTTAGGAACTTCAACTTAACAAATGAATGCGTTGGATATCAAAATAAAGCGGCTGATGAGCTTGGAAATATCGACGTTTACAACATATATGCCCCACTTTGTAATTCTGCAACAAAAACTAGTTACTCTGGTAGTGATTTTGACCCTTGTTCTGAAGATTATACAGTTGCCTACTTAAATCTACCTAAAGTTCAAAAGGCTCTTCATGCTAAAGCCAGAAAATGGTCTTCTTGCAGTGACCTGAGTTGGACAGATAGCCCAGCAAGTATTCTACCAACTATAAATAGATTAATATCAAGTGGTATAAGCATTTGGATATATAGTGGTGATATAGATGGGCGTGTTCCCATAACCTCAACAAAGTATTCAATAAATTCCTTAAAACTACCTGTAAATACAGCATGGCGTCCATGGTACACTGGCAAAGAGGTTGGAGGATATGTGATTGGTTACAAAGGGCTCACACTTGTCACCGTAAGAGGTGCTGGACATATGGTTCCAAGTTACCAACCACACAGAGCACTATCCTTGATCGCATCTTTCCTTCATGGAAAACTTCCTCCTGAATCAAACTCTTAA 1521 0.3767 MFGWTEDTHTTTLKMSSILSQKVLLWSLILLVYQFSISCKANQQSKYLYKFIQSKRFQQKPSSHEEAFYLSAFVDEHVPNKVHVEEQLRLMKADKVKALPGQPKGVNFDQYAGYVTVDTKAGRELFYYFVESPLNSSTKPLVLWLNGGPGCSSFGYGAMQELGPFRVNSDGRTLSLNKDAWSNVANVIFLESPAGVGFSYSNKTSDYSNIGDNSTARDSYIFLLNWLDRFPQYKTRDFFIAGESYAGHYVPQLAHLILSNNKKMKHHRVINLKGIAVGNGWIDDNYCTKGMYDYFWMQSLNSDETHRGIEKLCDFRNFNLTNECVGYQNKAADELGNIDVYNIYAPLCNSATKTSYSGSDFDPCSEDYTVAYLNLPKVQKALHAKARKWSSCSDLSWTDSPASILPTINRLISSGISIWIYSGDIDGRVPITSTKYSINSLKLPVNTAWRPWYTGKEVGGYVIGYKGLTLVTVRGAGHMVPSYQPHRALSLIASFLHGKLPPESNS* 507
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3709 506 SUPERFAMILY alpha/beta-Hydrolases 96 499 IPR029058 -
Tpr1g3709 506 Pfam Serine carboxypeptidase 100 498 IPR001563 GO:0004185|GO:0006508
Tpr1g3709 506 Gene3D - 404 498 - -
Tpr1g3709 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 177 189 IPR001563 GO:0004185|GO:0006508
Tpr1g3709 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 190 200 IPR001563 GO:0004185|GO:0006508
Tpr1g3709 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 226 251 IPR001563 GO:0004185|GO:0006508
Tpr1g3709 506 PRINTS Carboxypeptidase C serine protease (S10) family signature 468 481 IPR001563 GO:0004185|GO:0006508
Tpr1g3709 506 ProSitePatterns Serine carboxypeptidases, histidine active site. 468 485 IPR033124 GO:0004185
Tpr1g3709 506 PANTHER CARBOXYPEPTIDASE 38 500 - -
Tpr1g3709 506 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 38 500 IPR001563 GO:0004185|GO:0006508
Tpr1g3709 506 Gene3D - 364 395 - -
Tpr1g3709 506 Gene3D alpha/beta hydrolase 91 350 IPR029058 -
Tpr1g3709 506 ProSitePatterns Serine carboxypeptidases, serine active site. 240 247 IPR018202 GO:0004185
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Tpr1g3709 Tpr-Chr1 41197737 41203345 Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3709 372 499 Calmodulin-binding Proteins AT2G22960 30.075 3.35e-12 63.5
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3709 K16297 - gmx:100818983 693.345
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3709 1 41197737 41203345 Tpr1g3709 1 41197737 41203345 ECH