Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3665 ATGCGTGGATTGCAAAAATCGAAGAGAGTTTCATGGGCCTCAGGTTTAGATCTTTGTCAGGTTAAGTTATTCTTATCAGAGGACTCTCCTTCACAAGTTGGGTTGAATTCTCAAGATCACCTCCAAGCAAAGATATCGTCCTTGTTGCATCAAGGAGAAGCTAGTTCTGATGATATTTTGCCTCCTGGATTCGAGGGAACTCATGCTTCAAGTCAGTTTGACATTAAGCCATCCCAAATACCAGTTATTAACTGGATTAATCCACCTAAGATCGTGCTAGATGTCACATGGCAAGTGGTGGCTGGGGAAGAAAGCAAAGAGATAGTTGATCAACATCAGAGGGAGATGAGAGTCCTTGAAGCTATTTATCCACGAATATCTTCCATTCCTCCAAATCCTGCTGTTCCAGTGAACGTCGAAGATTCCCATTACATTGATGATCATACTGTTGTAATACCAATTACACCTGTTGAAGACGGGGATGCGGCAGCAGATACATTATCTCACGGTATATTAGACAGTTCAAACTCTGCTACGAGTATGTCAATGGCGTCTGATGTAGCTGCTGCATCTGTTGCTTTAACTAGCTTAGTGAAGAACAGTGAACATGGTAATTTGATTGACCGTGAATTACTCAATAATATTCTCAACAATCCTGAAGTGATTGAAAAGTTGGTTAGAGATTATGGAGCTCAAAATCATGCACAGTATGTACAAAACATGGGATCATCTTCAGGAATTTATTCATACGCTCCTAATCGTGTTAATCAAGTTGAAACCACTACAACCTCATCAAACGCTTTTTCATCCACTTCTTCCTATACTCACACAACTGGAGGTCAGATGGGCCCAACTATTTCTACCCAATGGCATCCTAGGCCTGTAATGAGTTCGGCTATTGCTGCTACTTCTGTTGAGGCCCCTTCAACAAAAGATGCAAACTACTATAAGAGCTTGATTCAACAACACGGAGGAGATAAACAAGAAGCACTTCCATACTCCAGTAATCGTCATAACCAGCAACCATTATCAAACTATGATACAATACACAATTTTAGAGCAAAAGGGTCAAAAGCAAAGATAATGAAGCCTTGTATCTTTTTTAATAGTTCCAGAGGATGTCGGAATGGAGCTAATTGTGCCTTTCAACACGATGCATCATATCAGCCACAACAAGGTAATCCTGTGTCAGGGATACAAAGTTCAAAGAGAATGAAAATGGATAATGAGATCAGCAGTTAA 1242 0.4034 MRGLQKSKRVSWASGLDLCQVKLFLSEDSPSQVGLNSQDHLQAKISSLLHQGEASSDDILPPGFEGTHASSQFDIKPSQIPVINWINPPKIVLDVTWQVVAGEESKEIVDQHQREMRVLEAIYPRISSIPPNPAVPVNVEDSHYIDDHTVVIPITPVEDGDAAADTLSHGILDSSNSATSMSMASDVAAASVALTSLVKNSEHGNLIDRELLNNILNNPEVIEKLVRDYGAQNHAQYVQNMGSSSGIYSYAPNRVNQVETTTTSSNAFSSTSSYTHTTGGQMGPTISTQWHPRPVMSSAIAATSVEAPSTKDANYYKSLIQQHGGDKQEALPYSSNRHNQQPLSNYDTIHNFRAKGSKAKIMKPCIFFNSSRGCRNGANCAFQHDASYQPQQGNPVSGIQSSKRMKMDNEISS* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3665 413 MobiDBLite consensus disorder prediction 389 413 - -
Tpr1g3665 413 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 177 408 - -
Tpr1g3665 413 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 180 - -
Tpr1g3665 413 SUPERFAMILY CCCH zinc finger 364 387 IPR036855 GO:0046872
Tpr1g3665 413 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 177 408 - -
Tpr1g3665 413 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 1 180 - -
Tpr1g3665 413 ProSiteProfiles Zinc finger C3H1-type profile. 359 387 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3665 Tpr-Chr1 40774548 40779536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tpr1g3665 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3665 - - cam:101501814 627.861