Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3652 ATGGCAGAGACCATCTGGAATGAAGATACAATATCTTGTTATGGCTGTGGTTTGACATTGCCATGCAAAACCATGAAGAAGGTTAAGGATTCAAGCTGTGCTCCTCAGTATTATTGTAAATCTTGTGCAAAGTTACTTAAATCGAAACAATATTGTGGCATTTGCAAAAAGATTTGGCACCATTCAGATGCTGGTGATTGGGTATGCTGTGATGGTTGTAATGTTTGGGTGCATGCTGAGTGTGACAAAATTTCTAGCAAACTTTTGAAGGATCTGGAAAATATAGATTACTATTGCCCAGATTGCAAGGGAAAGTCGGATTGTAAATTATCAGCATCACAAACATACAAATCAATAAAATCAGTAGGGAACAACCAAAAACCTGTGTTACCTGAAAAGCTAGCTGTGTCATCTACATTTAATAATTTCTCTGGTCTTGCCATTTTTGCTGTATTATTACATTATATCAAATTCTTCAGGAAAGTAGTAACTTATGGATCCAGCAAAATAATTCTACAGTGA 522 0.3582 MAETIWNEDTISCYGCGLTLPCKTMKKVKDSSCAPQYYCKSCAKLLKSKQYCGICKKIWHHSDAGDWVCCDGCNVWVHAECDKISSKLLKDLENIDYYCPDCKGKSDCKLSASQTYKSIKSVGNNQKPVLPEKLAVSSTFNNFSGLAIFAVLLHYIKFFRKVVTYGSSKIILQ* 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3652 173 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 43 109 IPR013083 -
Tpr1g3652 173 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE 7 150 - -
Tpr1g3652 173 Pfam PHD-finger 51 104 IPR019787 -
Tpr1g3652 173 SMART PHD_3 51 103 IPR001965 -
Tpr1g3652 173 CDD PHD_TCF19_like 52 102 - -
Tpr1g3652 173 ProSiteProfiles Zinc finger PHD-type profile. 49 105 IPR019787 -
Tpr1g3652 173 ProSitePatterns Zinc finger PHD-type signature. 39 102 IPR019786 -
Tpr1g3652 173 PANTHER PHD FINGER PROTEINS 7 150 - -
Tpr1g3652 173 SUPERFAMILY FYVE/PHD zinc finger 48 110 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3652 Tpr-Chr1 40652837 40655861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3652 7 76 EF-hand Containing Proteins AT5G28340 55.714 2.64e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tpr1g3652 PHD 1.6e-09 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3652 - - lja:Lj1g3v5034780.1 229.95