Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3647 ATGCAGAGATCACTATGGTTACCAATTTCCAACCCCTTAATGGATCATCCAATTCCAACCCAATCTTACTCTTTTGGATGGCAAGACACTTGGGCTTTCCTTCTTGCTGCTCTCTCCATTTATTTTTGTGTTTCAGCTAGTATATTATATGGATTTTATGGAGATTCTCGTTTGATTCTTGGTCCTAGTTCATCACGTTTGATAAAAACAAGTTCACTTTTTGTTCAACAAATTGAAGTCATAAATAACTATACTACTACTAATGATGATATTAATCTTTATGCTTTCACTGAGAAACCTGAATTAAGTTCTCAAATTAATTGGACTACATCAAAGTTTTTAGTTGTTGAAGCCTATACTCGCAAGGGAATTTCTTTGTGGTTAAATAAAGGCTCCAAAATCTATTTGAGGTGGGAAGCAGATGCTAGTAGTTTAAGTCAACTTGAAGGAGTAGTGATTAAAGGAGGAAGGAGGTTAGAACAACTAAAGCCTAAACAAACTACCTTTAACTTTTCAATGCCAATTGCTGTTAGAGAGACTGAAAATGGTAAAGAAGCTGAATACATTGTTGAGGAAGATGATAAGTACCACATTGGTGTTCTAAACATGAATGCTAGGAACATAATCTTGACCATGAATGTCAATGTTTCTGCAAAGATATATGATACTACCAAAGCCACAAATATGTGCTCTACTGGGAATGGTTCATGCAAACTTAGCACTTTTTTCCCTATCACATATTATGTAATTCTAACCAAACCAAAAAATGGAAATGATGATGAAGCATGGTTTGTTGAAGTTTCTTTTATGTCTCGTGTTTTTTCTTACATAATTCTCTTAGGAATTTTCATGATTGTGATTTTTTTGATATTGAAATGCCTTGGAGCTGATGATAATCACAATGAAGTTGAAGCTCAAGGAGTGACTGAAACACAACCTCTAATGCAGACAAATCCAATATCATATGGAACATATAAATTTCATGATAAGAAAGAAGAAGAATCAGATGCATCAAGTAGCTCTTCAGAGGAATTGTATAATGAAAAATTGTGTATAATTTGTTATGATGAACAACGAAACTGTTTCTTTGTTCCTTGTGGTCATTGTGCCACTTGCTATGACTGTGCACAAAGGATTATGGATGGGGATAGCAAAGTTTGTCCCGTATGCCGGAGACTTATTCATAAAGTAAGAAGATTATTCAATAGTTAG 1212 0.3424 MQRSLWLPISNPLMDHPIPTQSYSFGWQDTWAFLLAALSIYFCVSASILYGFYGDSRLILGPSSSRLIKTSSLFVQQIEVINNYTTTNDDINLYAFTEKPELSSQINWTTSKFLVVEAYTRKGISLWLNKGSKIYLRWEADASSLSQLEGVVIKGGRRLEQLKPKQTTFNFSMPIAVRETENGKEAEYIVEEDDKYHIGVLNMNARNIILTMNVNVSAKIYDTTKATNMCSTGNGSCKLSTFFPITYYVILTKPKNGNDDEAWFVEVSFMSRVFSYIILLGIFMIVIFLILKCLGADDNHNEVEAQGVTETQPLMQTNPISYGTYKFHDKKEEESDASSSSSEELYNEKLCIICYDEQRNCFFVPCGHCATCYDCAQRIMDGDSKVCPVCRRLIHKVRRLFNS* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3647 403 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 23 402 - -
Tpr1g3647 403 Pfam Zinc finger, C3HC4 type (RING finger) 348 397 - -
Tpr1g3647 403 SMART ring_2 351 390 IPR001841 -
Tpr1g3647 403 Pfam Domain of unknown function (DUF4793) 186 289 IPR032010 -
Tpr1g3647 403 ProSiteProfiles Zinc finger RING-type profile. 351 391 IPR001841 -
Tpr1g3647 403 Pfam Domain of unknown function (DUF4792) 93 159 IPR032008 -
Tpr1g3647 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 326 403 IPR013083 -
Tpr1g3647 403 SUPERFAMILY RING/U-box 341 397 - -
Tpr1g3647 403 PANTHER OS05G0521000 PROTEIN 23 402 IPR044586 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3647 Tpr-Chr1 40593651 40596693 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3647 334 401 C3H Transcription Factor Family AT1G62370 35.294 2.33e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3647 - - cam:101496542 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3647 1 40593651 40596693 Tpr1g3647 1 40593651 40596693 ECH