Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3617 ATGGCATTAGTTATGATAAAACCTCAAAAAAATGATCATCAAGATGCAAATATTATCAAACTTGAATCAGCTTATTCTGATTTAGAATCACTTCTTAAATCAACAAAACAAATGGAACAAAACATTGAAACAATGGAAACAAGGTTTGATCTTTTACAAGGATCACTTACAACAGCTACAAGAAGAATACACCCTTTACAATCTTTATCTATGTCAAGAAAAGCACTTGATACAAGAATCAATAGAGCTATTTCCCCTGCTTTAGCTCTTCTCGAAACATTCAAACTCGCCGAATCTCTTCAAAATAGTCTCCTTAACCTCTCTTCGAAACTTTCATCCGAAAAAATGCACCAGAAGAGGCTTGAGAAGCTTTTAGATTACATGGATTGTGTTGATCAGTTGAATGAAGCTATTAACTCTATATGTCAAGTTGTTGAGCCAGTGATTATGAGGCTTCAAGAAGTTGTTGAGTTTATAAGTAGAACAAAAGCTGCTGATCAATATAGAACACAAAGGTTAAGAGAAGCACTTATAACTCTTAAAGCACTTTATGAAACTGAGGTTGATGAAATGAGATTTGAAGGGTTGTTGGATCAGGCTTTGCTTAATATGCAAGATGAATTTGAGGCTCTTTTGATTAAATTGAAGCATAGGAAGTTAGGTGATTTGTCACATAGGCAAAATGATGGTGATGAAAGTGATGATCATTTGGATGTTAGCTTTGAATTAGGATCTGAGTTGGAAATTGAAGTCTTGAGAAGAATTTCAAATATTCTTGCTGCTAATGATTGCTTGGATATATGCATTGACATCTATGTTAAGGTAAGATACAAAAGGGCTGCAAAAGCATTAATGAAGTTAAACCCTGATTACCTAAGAACATACACACCAGAAGGAATCGATGAAATGGAGTGGGAAAACTTAGAAACATCGATAACCCTATGGACACAACACTTTGAAGTTGCAACAAAGAAGGTTCTTTTATCAGAAAAGAAACTCTGCGAAAGCGTTCTAGGCGACATCATAGACGGAATAATCCATCCAGAATGCTTCGTGAAAATATCGGACAAGATCATGGCCGTGTTCTTTAGATTCGGAGAAGGTGTGGCCAGAAGCAACAAAGAGCCACAAAAACTCTTCAAACTATTAGACATGTTTGAGTCATTGGAGAAACTCAAACCTCATGTACTTGATATCTTTGATGGTGAATCCGGAGAGGATATCTGCGTGCGGTTTCGTGAACTTGAGAAGCTAATCATTGATGCATCAAGCAAAGTTTTTTGGGAATTCGGGTTGCAAATCGAAGGAAATGTCGATGGTTTTCTTCCGCCTCCACAAGATGGTTCAGTACCGAAAATAGTAAGGTATGCTGTTAACTATCTTAAGTACTTATCCACTGAGAATTACAGAAAAACAATGGCTAAGGTTCTAAGAACAGAACAAACATGGAAAACCGAGTTGATGTTATCGTCAAAAGACGAAACAGACGAGGATTTATTGAACCATGCCATTTGTAATGTAATGGAGGCACTTCAAAGAAACATCGAATCCAAACGTTTGAGTTGTAAGGACAGGATTTTGGTTAATATCTTCATGATGAACACATATTGGTATATGTATATGAGAACAAAGAACACAGAACTTGGTGATTTGTTAGGTGAGAAATACATCAAAGAAAATTACAAAGCAGTTGCAGAAGAATCAGCTTACTTGTATCAGAAGCAAGCTTGGTTAGTTTTGGTGAAAATTTTGGAACATGATATTGACATAATGGAACAAAAACAAGGGAAAGAAAAAAGCATTGGAAGGTTAGTGAATGAAAAATTTGAGACATTTTTTAAGTGTTTGAGTGAAGTGTGTGAGAGGCATAGGAGTTTTTATAGTATACCTGATGTTGATTTGAAGGAACAAATGAGGGATTCAACAGTGAAACTTGTTGTGCCAATTTATGCTGAGTTTTTGGAGTCTTATTCAGGATTGTTGCAAAGGAAAGTTTATCCTAGTCCTCAAAGGTTACAAGGGTTGATTGGAAAAGCTTTTGGTTCTAATCATGATTGGAATTTGAATGGTGGAAGAAATTCTGGTTCTTTGGAAACTGATGTTAGAAAGTCTAGATGA 2118 0.3574 MALVMIKPQKNDHQDANIIKLESAYSDLESLLKSTKQMEQNIETMETRFDLLQGSLTTATRRIHPLQSLSMSRKALDTRINRAISPALALLETFKLAESLQNSLLNLSSKLSSEKMHQKRLEKLLDYMDCVDQLNEAINSICQVVEPVIMRLQEVVEFISRTKAADQYRTQRLREALITLKALYETEVDEMRFEGLLDQALLNMQDEFEALLIKLKHRKLGDLSHRQNDGDESDDHLDVSFELGSELEIEVLRRISNILAANDCLDICIDIYVKVRYKRAAKALMKLNPDYLRTYTPEGIDEMEWENLETSITLWTQHFEVATKKVLLSEKKLCESVLGDIIDGIIHPECFVKISDKIMAVFFRFGEGVARSNKEPQKLFKLLDMFESLEKLKPHVLDIFDGESGEDICVRFRELEKLIIDASSKVFWEFGLQIEGNVDGFLPPPQDGSVPKIVRYAVNYLKYLSTENYRKTMAKVLRTEQTWKTELMLSSKDETDEDLLNHAICNVMEALQRNIESKRLSCKDRILVNIFMMNTYWYMYMRTKNTELGDLLGEKYIKENYKAVAEESAYLYQKQAWLVLVKILEHDIDIMEQKQGKEKSIGRLVNEKFETFFKCLSEVCERHRSFYSIPDVDLKEQMRDSTVKLVVPIYAEFLESYSGLLQRKVYPSPQRLQGLIGKAFGSNHDWNLNGGRNSGSLETDVRKSR* 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3617 705 SUPERFAMILY Cullin repeat-like 124 678 IPR016159 -
Tpr1g3617 705 Coils Coil 28 48 - -
Tpr1g3617 705 PANTHER OS08G0519900 PROTEIN 15 680 - -
Tpr1g3617 705 Pfam Exo70 exocyst complex subunit 315 674 IPR046364 GO:0000145|GO:0005546|GO:0006887
Tpr1g3617 705 Gene3D Exocyst complex component Exo70 162 686 - -
Tpr1g3617 705 PANTHER EXOCYST COMPLEX PROTEIN EXO70 15 680 IPR004140 GO:0000145|GO:0006887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3617 Tpr-Chr1 40335822 40338918 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3617 15 668 EXO70 exocyst subunit family AT4G31540 28.060 5.17e-71 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3617 - - aip:107605596 978.778