Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3610 ATGGCGGAACAAACTGAGAAGGCTTTTTCGAAGCAACAGAAAGTGTTTTTAAGCTCGAAGAAATCTGGAAAGGGGAAGAGACCTGGAAAGGGTGGTAATCGATTCTGGAAATCTGTTGGCCTTGGTTTTAAGCCTCCAAGAGATGCCATTGAAGGAACCTATATTGACAAGAAGTGCCCATACACTGGCAATGTCTCAATCCGAGGTCGTATTCTAGCCGGTACTTGTCACAGTGCTAAGATGAATAGGACCATTATTGTTAAAAGGGATTATCTTCATTTCGTTAAGAAGTATCAGAGATATGAGAAGCGTCATTCTAATATTCCTGCACACATATCACCTTGTTTCCGAGTGAAGGAAGGAGATCATGTTATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTTAGATTCAATGCATTGAAAGTGATCCCAGCCGGATCTGCTAGTGGTGCAAAGAAGGCGTTTACAGGAATTTGA 480 0.4208 MAEQTEKAFSKQQKVFLSSKKSGKGKRPGKGGNRFWKSVGLGFKPPRDAIEGTYIDKKCPYTGNVSIRGRILAGTCHSAKMNRTIIVKRDYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNALKVIPAGSASGAKKAFTGI* 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3610 159 MobiDBLite consensus disorder prediction 1 19 - -
Tpr1g3610 159 Pfam Ribosomal_S17 N-terminal 4 72 IPR032440 -
Tpr1g3610 159 PANTHER 40S RIBOSOMAL PROTEIN S11-1-RELATED 1 159 - -
Tpr1g3610 159 MobiDBLite consensus disorder prediction 1 31 - -
Tpr1g3610 159 Pfam Ribosomal protein S17 74 141 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr1g3610 159 Gene3D - 1 158 - -
Tpr1g3610 159 SUPERFAMILY Nucleic acid-binding proteins 68 147 IPR012340 -
Tpr1g3610 159 PRINTS Ribosomal protein S17 family signature 88 111 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr1g3610 159 PRINTS Ribosomal protein S17 family signature 121 131 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr1g3610 159 PRINTS Ribosomal protein S17 family signature 131 138 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr1g3610 159 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 1 159 IPR000266 GO:0003735|GO:0005840|GO:0006412
Tpr1g3610 159 TIGRFAM uS17_arch: ribosomal protein uS17 55 142 IPR028333 -
Tpr1g3610 159 ProSitePatterns Ribosomal protein S17 signature. 121 133 IPR019979 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3610 Tpr-Chr1 40285663 40287733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3610 1 159 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 85.535 3.26e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3610 K02949 - gmx:100784140 292.352