Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3609 ATGCCTTCATTTGAGATTAACAATGCTTTGATGGGTTTTGAAACATCTTTCAAAGGTTGTGTTTTTAGTGTCTTAGACACTGAAAAAAAAATGGATCTTAAGTTAATGATTGAAGAGCTTGATCCAATTCATGATGTTCCTTCTGTGTTTATATGTCCAATTTCACTTGAACCAATGCATGAGCCAGTTACACTTTGCACTGGTCAAACCTATGATAGATCCAACATCCTTAAATGGTTTTCACTTGGTCATAAAACATGTCCAACAACTATGCAAGAGCTTTGGGATGATTCAATCACTCCTAACAACACTCTCAAACAATTGATTCTTTCTTGGTTTTCACATAAGTACTTGGTAATGAAGAAGAAGCTTGAAGATGTTCAAGGAAGAGTTTTGGAAACATTGGAGACACTTAAAAAGGTAAAAGGTCAAAGTAGAGTCAAAGCTCTTAAGGATCTTAGAAAACTTGTTGATTCTCATGTTTGTGCTAGGAAAACATTGTTGGAAAATGATGGTGTTGGTTTGGTTTGTTCTTTGTTAGGTCCTTTTACTTCACATGTTGTTGGTTGTGAAGCTATTGGTATAGTTGTTAATTTGGATTTAAGTTCAGATTTCAAGAGAAAAAATCTTATGCATCCAGCTAAAGTTTCATTAGTTGTTGATATCATGAATGAAGGAACAATTGAAACAAAGATGAATTGTGCTAAATTGATTGAAATGTTGTTGATGGAAGAAGAAAATGAAAATGAGGGTAAGATTGAGATTGTGTCAAGTTTAAGTCTTTTGGTTGGATTATTGAGATTGGTAAGAGATAAGAAACATCCAAACAGTGTCTTAATTGGTCTCACATTACTAAAAAAGGTACTATCTTCACATGAATCAGTTAGAAATTCAGTTATAACTATAGGAGCAATTCCTCAATTGATTGAGATTTTACCAAATTTGAACAATGAATGTTTGGAGATAGCACTTTATATATTGGAAATATTGTCAACAATTGAAGAAGGGAAATTGGCTTTGAAAGAATGTCCTAATATTATTCCTAATGTGGTGAAGATGTTGATGAGAGTATCAGAAAATTGTACACAATTTGCATTGTCAATTTTGTGGGCTATTTACAAACTTGCACCTGAAGAATGTGCTTCAAAAGCTGTGGAAGCTGGTTTGGCTTCAAAATTATTGCTTGTGATTCAAAGTGGTTGTAATCCTGTTTTGAAACAAATGTCTTCTGAGTTTTTGAAAATGTGTAGTGTGAATTATTCTACTAGTAGTATTTTTATTTCTAAGTGTATGCTTACTACTACAATACAATGA 1314 0.3265 MPSFEINNALMGFETSFKGCVFSVLDTEKKMDLKLMIEELDPIHDVPSVFICPISLEPMHEPVTLCTGQTYDRSNILKWFSLGHKTCPTTMQELWDDSITPNNTLKQLILSWFSHKYLVMKKKLEDVQGRVLETLETLKKVKGQSRVKALKDLRKLVDSHVCARKTLLENDGVGLVCSLLGPFTSHVVGCEAIGIVVNLDLSSDFKRKNLMHPAKVSLVVDIMNEGTIETKMNCAKLIEMLLMEEENENEGKIEIVSSLSLLVGLLRLVRDKKHPNSVLIGLTLLKKVLSSHESVRNSVITIGAIPQLIEILPNLNNECLEIALYILEILSTIEEGKLALKECPNIIPNVVKMLMRVSENCTQFALSILWAIYKLAPEECASKAVEAGLASKLLLVIQSGCNPVLKQMSSEFLKMCSVNYSTSSIFISKCMLTTTIQ* 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3609 437 SUPERFAMILY RING/U-box 42 114 - -
Tpr1g3609 437 Gene3D - 127 428 IPR011989 -
Tpr1g3609 437 SUPERFAMILY ARM repeat 260 425 IPR016024 -
Tpr1g3609 437 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 126 IPR013083 -
Tpr1g3609 437 ProSiteProfiles U-box domain profile. 45 119 IPR003613 GO:0004842|GO:0016567
Tpr1g3609 437 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 24 436 - -
Tpr1g3609 437 PANTHER WDSAM1 PROTEIN 24 436 IPR045185 GO:0061630
Tpr1g3609 437 Pfam U-box domain 46 116 IPR003613 GO:0004842|GO:0016567
Tpr1g3609 437 SUPERFAMILY ARM repeat 136 247 IPR016024 -
Tpr1g3609 437 SMART Ubox_2 49 112 IPR003613 GO:0004842|GO:0016567
Tpr1g3609 437 CDD RING-Ubox_PUB 50 92 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3609 Tpr-Chr1 40282619 40284494 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3609 1 437 U-box Gene Family AT3G49810 57.768 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3609 - - gmx:100803878 604.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3609 1 40282619 40284494 Tpr1g3609 1 40282619 40284494 ECH