Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3586 ATGATGAATTTTGATGATAGCTCCAACACAAGTTTTCATGTTGATCTTGATCTTGGTCTTGCCCTTCATGATCAATATTTTGATGGCCATAGGAAGAGAGAAAGCAAGAAAAAAGAAGAGAATCCATCAAAATATAATATAGCTTATCCATCTCTTACATTAGGACCATCAAATGAAGAGGATGAAGAAAATACTAATTATATTATTCTAGATTCAGCTTCAAAGATCGAGTCTTGTGATCAAAATTTACTTACTTCACTAAGCATAGAGTCTTCATTTTCGAACTCAACAAGCATGAAGAAGGAAACATGTGAGGAACTTGAGGTTGAGATTGAGAAGGTTCCAATTCCAAAGGTTGGAAATGTTGATGAAGATGGTAATCCAAGGAAGAAACTTAGACTCACAAAAGAACAATCAGAAGTGTTGGAGGAAAATTTTAAAGAGCATTCTACTCTTAATCCGAAGCAAAAGCAAGCATTAGCACAAAAGCTAAATCTCCAGGCAAGGCAAGTAGAGGTGTGGTTTCAAAATCGGAGAGCCAGGACAAAACTGAAACAAACGGAATCAGATTTTGAAGAACTAAAGAAGTGTTGCGAAACTCTAACAGAAGAGAACATGAAATTGCAAAAGGAGCTACAAGAATTGAAGTCAATGCAAACAGTGGCAACAACTACAACACCTTTTTATATGCAAATTCCAGCAGCAACACTTACAATATGTCCTTCTTGTGAGACAATTTGTGGTGGTAACAACAACAACAACAATGGTACCACAACATTGCTTATTGGCTCAAAGGGTCATGGTCTCTATAAAAATAATGATGATAATTATCAATTCCCTCACTCATCATCTGCAGCATGTTAG 864 0.36 MMNFDDSSNTSFHVDLDLGLALHDQYFDGHRKRESKKKEENPSKYNIAYPSLTLGPSNEEDEENTNYIILDSASKIESCDQNLLTSLSIESSFSNSTSMKKETCEELEVEIEKVPIPKVGNVDEDGNPRKKLRLTKEQSEVLEENFKEHSTLNPKQKQALAQKLNLQARQVEVWFQNRRARTKLKQTESDFEELKKCCETLTEENMKLQKELQELKSMQTVATTTTPFYMQIPAATLTICPSCETICGGNNNNNNGTTTLLIGSKGHGLYKNNDDNYQFPHSSSAAC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3586 287 Pfam Homeodomain 129 183 IPR001356 GO:0003677
Tpr1g3586 287 ProSitePatterns 'Homeobox' domain signature. 160 183 IPR017970 GO:0000981|GO:0006355
Tpr1g3586 287 PANTHER - 12 285 - -
Tpr1g3586 287 Coils Coil 177 218 - -
Tpr1g3586 287 SUPERFAMILY Homeodomain-like 124 186 IPR009057 -
Tpr1g3586 287 SMART halz 185 228 IPR003106 GO:0006355|GO:0043565
Tpr1g3586 287 SMART HOX_1 127 189 IPR001356 GO:0003677
Tpr1g3586 287 ProSiteProfiles 'Homeobox' domain profile. 125 185 IPR001356 GO:0003677
Tpr1g3586 287 MobiDBLite consensus disorder prediction 31 60 - -
Tpr1g3586 287 Gene3D - 120 191 - -
Tpr1g3586 287 CDD homeodomain 128 186 IPR001356 GO:0003677
Tpr1g3586 287 Pfam Homeobox associated leucine zipper 185 218 IPR003106 GO:0006355|GO:0043565
Tpr1g3586 287 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 12 285 - -
Tpr1g3586 287 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3586 Tpr-Chr1 40010815 40014014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3586 123 246 Homeobox Transcription Factor Family AT4G37790 72.000 8.27e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tpr1g3586 Homeodomain 3.6e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3586 K09338 - gmx:100797650 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3586 1 40010815 40014014 Tpr1g3586 1 40010815 40014014 ECH