Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3570 ATGGGTATCTGCATATCCGTTGCATCTTCAGAGATTCATGGAATCCCTCAAGTTCATGATGAAAATATCATGATATTTGAAGCAAGCAAGATTCAACATGAGACTCAAAGAATTTGTTCTGTTTACTCTAAACAAGGTACTAAAGGTCTCAACCAAGATGCTGCATCTCTTTATAAGGGTTATGGGATTGAAGATGGAGCATTTTGTGGTGTTTATGATGGACATGGAAGGAATGGACGTATAGTGAGCAAAATAGTAAACAATAGTTTACCTTCTCTCATATTGAGCCAAAAGAATGCTATTGAGGAGATTAATGGTGTTGACAACAAACAAAACCAATTTTCAAAAAACTTCCTAAATATGAAAGAAGCTATTCTTGGTGCTTTCAAAGTGATGGATGAGGAGGTGAAATTACAAGAGAATCTTGATTGTTCTTGTAGTGGAACAACTGCTGTAGTTGTCATAAGACAGGGTGAAGGACTTTTCATAGCTAATTTGGGTGATTCAAGAGCAATCTTAGGGACAATTCATGATGCAAAACTCAAAGCTATTCAATTGACTACAGATTTGAAGCCTGGATTGCCTTCCGAAGCAAAGAGAATAAGGAGTTGCAACGGTTGTGTATATGCGCTGAAGGAAGAACCACATGTCCAACGAGTATGGTTGCCCAACCAGAACTACCCGGGTCTAGCCATGTCTAGAGCTTTTGGAGATTTTATACTTAAAGACCATGGAGTTATTGCTATTCCAGATATTTCCTATCACCCTTTAACATCAAGTGACCAATTTATTGTTCTTGCAAGTGATGGGGTGTGGGATGTACTAAGTAATGAGGAGGTTGCATCAATTGTGTGGATGATAGAAAGTGAAGAGGAAGCTGCAAGGGCAGTGGTGGAAGCAGCCACAGCTGCTTGGGCAAAGAAGTATCCTTCCTCTAGGGTAGATGACTGTACAGTGGTTTGCCTTTTCCTGCAGAAGAAACCACAAAACTTGGGGTATATGGAAAAGGGAAAATTAGGTTAA 1023 0.3949 MGICISVASSEIHGIPQVHDENIMIFEASKIQHETQRICSVYSKQGTKGLNQDAASLYKGYGIEDGAFCGVYDGHGRNGRIVSKIVNNSLPSLILSQKNAIEEINGVDNKQNQFSKNFLNMKEAILGAFKVMDEEVKLQENLDCSCSGTTAVVVIRQGEGLFIANLGDSRAILGTIHDAKLKAIQLTTDLKPGLPSEAKRIRSCNGCVYALKEEPHVQRVWLPNQNYPGLAMSRAFGDFILKDHGVIAIPDISYHPLTSSDQFIVLASDGVWDVLSNEEVASIVWMIESEEEAARAVVEAATAAWAKKYPSSRVDDCTVVCLFLQKKPQNLGYMEKGKLG* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3570 340 CDD PP2Cc 37 324 IPR001932 -
Tpr1g3570 340 Pfam Protein phosphatase 2C 64 303 IPR001932 -
Tpr1g3570 340 ProSiteProfiles PPM-type phosphatase domain profile. 38 324 IPR001932 -
Tpr1g3570 340 SMART PP2C_4 28 322 IPR001932 -
Tpr1g3570 340 Gene3D - 20 327 IPR036457 -
Tpr1g3570 340 PANTHER ALPHABET, ISOFORM E-RELATED 1 329 - -
Tpr1g3570 340 PANTHER PROTEIN PHOSPHATASE 2C 72-RELATED 1 329 - -
Tpr1g3570 340 SUPERFAMILY PP2C-like 29 325 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3570 Tpr-Chr1 39845254 39847297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3570 1 329 PP2C-type Phosphatase Gene Family AT5G26010 54.167 1.28e-108 318
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3570 - - aip:107605550 471.855
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3570 1 39845254 39847297 Tpr1g3570 1 39845254 39847297 ECH