Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3563 ATGGCTTACAGCAACAACAATGTTTGTGATCATTTATCACTAGGTTTGTGCCCTTGTACAACAACAACAACTATTGAGACAAAATTCTTGAATTCTTCCAACAAAAAGAGGAAACTTAAGCAACAAGCAACTGATGATAGAGCAACAAAGAAGAAAACAAAGAAGAAGAAGAGATGCAATGATGATATAGGGAGAAATTGGGGTTACTCAACTAAGTTGATGCTATATGATGATCCTTGGAAGGTTAAAAAAGTGTTGGAAAAGAGTGATGTTGACCATTCGAGTAGACTATTGCTCGATAAAAATTTGGTTGAGGATTTGATGTTGCCTGTGCTGAGTGTTAATGCTGCGAAAGAAATTCAAATGAAAATATGGGATATTGACACTAAATCTATGCACTCTCTCAAACTCAAGAGATGGGGTTCAGGAAGCTATGTTTTAATTGACGGATGGGTCAGAGATTTTGTAGCTAGGAGGGGCTTACAGAAAGGGGATGAGATTGGTCTTCATTGGGATCGATACAACCGACATTTTAATTTCACTGTTTTTCAAATCTTCAAGCCAATCAAGATAGACAAATAG 582 0.3677 MAYSNNNVCDHLSLGLCPCTTTTTIETKFLNSSNKKRKLKQQATDDRATKKKTKKKKRCNDDIGRNWGYSTKLMLYDDPWKVKKVLEKSDVDHSSRLLLDKNLVEDLMLPVLSVNAAKEIQMKIWDIDTKSMHSLKLKRWGSGSYVLIDGWVRDFVARRGLQKGDEIGLHWDRYNRHFNFTVFQIFKPIKIDK* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3563 193 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 26 183 - -
Tpr1g3563 193 MobiDBLite consensus disorder prediction 34 57 - -
Tpr1g3563 193 CDD B3_DNA 80 183 IPR003340 GO:0003677
Tpr1g3563 193 Gene3D - 79 183 IPR015300 -
Tpr1g3563 193 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 26 183 - -
Tpr1g3563 193 SUPERFAMILY DNA-binding pseudobarrel domain 78 183 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3563 Tpr-Chr1 39770063 39770807 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3563 82 163 B3 DNA Binding Superfamily AT1G20600 39.535 3.14e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3563 - - cam:101505348 178.718