Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3562 ATGGAGAATGGTGTATACAATGTTCCAATGAACATGGCTGGTCAAATTTCTAATGTCATAGAAGATATCACACAAAAGCCACTCATTCATTGCTATTCATTTGACCTTAACAATCAAACCATTATAAATGGAATTCCAATACTTTCTGCAGAACAAAATCAACAACATGTTGATGTTAGTAGTAGTAGTTTCATAAATCATCCAAATATTGCTGATTCTACTTCATTTGTTACATCACAACATGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAACAACAATCACTTTTCAGTTCCTGCTAGACTTGGTCTTCAAGAAAATTTTGAAGCTATGGTGGTTCCATACATGTTCAATAATTGGAATGATGCATCGAACTCAAACCCTTTGTGTCCAACTTTTGGTGATAATAGTAACCATGTCAACAAGTTTTTGAAAGCTCAAGAGGGTAATGGTAATGGATTCATGCCATATTCGTCGATAGCAAACATTGATCCGAACGGATGGCAATTGTCACATGCTGCAAACTTAACAAATGTTGCTTATAGTTCATCAAATTGTAGCAATGAACTTTCACCAAGTCTTGCAACATCTCCAAATTCAGGTCAGTGTTCAGAGATTAGTTGCTCTGACTTGACTCATAGCATGAATGGAACAAGATCAGGTTTGGAACAACCTTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTCAAATTTTCGCCGGCGATATTAGGATCGAGATACCTTGCTGTAATTCAGGATATACTTGTTCAAATTGCAACATATTCATTTGAAAATCTAAATCTTGATGAGATCAATCATTCAGCTTCCGGTATTAGAGGGCGAGGAAATAAATCAAGTTCGTCGAACAAAGACAAGCGAAGGATAGGAGTAAACCGCGACACGAGTTCTATGTCAGAAGCATATGCTGATTCTTCATTGCAAAGACAAACTGCTGAATCAAAGAAATCACAACTTCTGATGCTTCTACAGATGGTGGACGGCCAATATAGTCGATGTTTGGCTGAGATTCACACCGTTGTATCTGCATTTCATGCTGCTACTGAGCTTGATCCTCAAATACATGCGCATTTTGCTGTTAAAACAGTTGATCGACTATATAAGGATTTGAGAGAGAGGATTAGTAATCATATTCTTGCCATGGGATCTAATATTAACAGCTCGTGGTCAGAAGATGATAATGAATTGTCTGTTGAAACTTCATTCATTCAAAAGCAATGGGCTCTCCAGCAGTTGAAAAGGAAAGACCAGTTATGGAGGCCTCAAAGGGGCTTGCCTGAAAAATCTGTTTCAGTTCTTCGTGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGACTAGAAGCCAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGACTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAGGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAATTTTTTAATATCAATTGA 1602 0.372 MENGVYNVPMNMAGQISNVIEDITQKPLIHCYSFDLNNQTIINGIPILSAEQNQQHVDVSSSSFINHPNIADSTSFVTSQHGRTIVENPSNLIVNNNHFSVPARLGLQENFEAMVVPYMFNNWNDASNSNPLCPTFGDNSNHVNKFLKAQEGNGNGFMPYSSIANIDPNGWQLSHAANLTNVAYSSSNCSNELSPSLATSPNSGQCSEISCSDLTHSMNGTRSGLEQPSCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQDILVQIATYSFENLNLDEINHSASGIRGRGNKSSSSNKDKRRIGVNRDTSSMSEAYADSSLQRQTAESKKSQLLMLLQMVDGQYSRCLAEIHTVVSAFHAATELDPQIHAHFAVKTVDRLYKDLRERISNHILAMGSNINSSWSEDDNELSVETSFIQKQWALQQLKRKDQLWRPQRGLPEKSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLTRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQFFNIN* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3562 533 MobiDBLite consensus disorder prediction 294 308 - -
Tpr1g3562 533 Pfam Homeobox KN domain 451 490 IPR008422 GO:0003677|GO:0006355
Tpr1g3562 533 SUPERFAMILY Homeodomain-like 435 503 IPR009057 -
Tpr1g3562 533 PANTHER HOMEOBOX PROTEIN ATH1 52 529 - -
Tpr1g3562 533 SMART HOX_1 434 498 IPR001356 GO:0003677
Tpr1g3562 533 ProSiteProfiles 'Homeobox' domain profile. 431 494 IPR001356 GO:0003677
Tpr1g3562 533 MobiDBLite consensus disorder prediction 286 310 - -
Tpr1g3562 533 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 52 529 - -
Tpr1g3562 533 Pfam Associated with HOX 251 390 IPR006563 -
Tpr1g3562 533 Gene3D - 437 516 - -
Tpr1g3562 533 SMART prehox3 245 391 IPR006563 -
Tpr1g3562 533 CDD homeodomain 434 494 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3562 Tpr-Chr1 39759033 39765339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3562 191 507 Homeobox Transcription Factor Family AT4G32980 55.486 2.24e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Tpr1g3562 POX 5.6e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3562 - - gmx:100812648 610.912
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3562 1 39759033 39765339 Tpr1g3562 1 39759033 39765339 ECH