Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3560 ATGTCAACACCAAAATCACCCTCACACTCCATCTTAATGCTATTTCCAGTTTTTCTCCTTATTCTCCTACCTCATTCCTCTCTCGCCGTTCGACCTATTCACTCCGATCCGTTCCAATTCCAACTCGCTAACTCCACTGACTCCAACGTCTCCATCTCCACAACTCGACAAGGTTCCTTCGCTGATATCATTGATCGTGCTCTTCAGCATGAATTCACCGACACCGATCAAAACGAAGTGCCTGATGCGGGAGGTTTCAACAACAGTGTAGCAGAACAACAGGCTGTTCTAGAGACTGTGGCCAGAGTCACGCCGAACAAGAATGACACTAAAGATGAAAAGTCATTTCAGCTCCATCGTGTATTCAATAGAGGCGAAGACACCCCAATGTTAATAGATCGAAAGGACAATGTATTTATCATTTCTAACTTTAAATCCAAGTATCCAGTGCTGCAGCTAGATTTACGATTGATTTCAGACTTGGTCATTGCTATTGTTTCGGCAACTTGTGGTGGTGTTGCATTTGCTTTTGCTGGACAACCAGTCATTACTGGATATCTTCTAGCTGGCTCCATTGTTGGACCTGGAGGCTTTAACTTCATCAATGAAATGGTGCAGGTGGAAACAGTGGCTCAATTTGGCGTAATATTTATTCTCTTTGCATTGGGCCTCGAGTTTTCCATGACAAAGCTTCGAGTTGTTCGATCTGTTGCTGTTCTTGGAGGCTTACTTCAAATTTTTCTATTTATGTGCATGTGTGGTTTTACTGTATCGTTATGTGGTGGTAAAGCTTCAGAAGGGATTTTTGTTGGTGCTTTCCTTTCTATGTCTTCAACAGCAGTGGTCTTGAAGTTTTTGATGGAAAAGAATAATACTAATGCCCTTCATGGCCAAGTCACAATTGGGACCCTTATTTTACAGGATTGTGCTGTTGGATTGCTCTTTGCATTGCTTCCTGTTTTGGGTGGCACCTCAGGTGTTTTTCAAGGAGTGTTATCAATGACAAAGCTGTTGGTGACATTGATTGCATTTCTCTCTATTCTGTCAATATTGTCTCGCACTTGCCTTCCGTGGTTGCTTAAACTGATGATAAGCCTATCATCACAGACAAATGAACTCTATCAGCTGGCGTCTGTTGCGTTCTGCTTGATTGTAGCCTGGTGTAGCGATAAGCTGGGATTAAGTCTAGAACTAGGTGCCTTTGCTGCTGGAGTGATGATTGCAACCACCGATCTGGCTCAACATACACTAGAGCAAATTGAACCTATTTGCAATCTTTTCGCTGCTCTTTTCCTTTCCAGCATTGGAATGCTGATTCATGTTCATTTTCTTTGGAACCATGTTGATATTTTGGTAGCATCAGTTATTTTAGTGATTGTTATAAAAACAATCATAATTGCTTCAGTTGTGAAAGGATTTGGTTATAATAACAAGACTTCAGTACTTGTAGGAATGTCCATGGCACAAATAGGAGAATTTGCTTTTGTTCTTCTCAGCCGTGCTTCAAATCTTCATCTAGTTGAGGGTAAACTATATTTGCTGCTTCTTGGGACCACCGCTCTTAGTCTGGTGACAACTCCTTTACTTTTCAAGCTGATTCCTGCTGTAGTGCATCTTGGTGTGCTATTGAGGTGGTTTTCTCCTGACAGTGCTGTAGAGATTGGATATAAGGTAGACAACCTCCTCCGCTCAGATAGCGCTAAGCAACGGATAGTTTTGATGGACAAAGAAGCTCGTGATTGTTAA 1746 0.4192 MSTPKSPSHSILMLFPVFLLILLPHSSLAVRPIHSDPFQFQLANSTDSNVSISTTRQGSFADIIDRALQHEFTDTDQNEVPDAGGFNNSVAEQQAVLETVARVTPNKNDTKDEKSFQLHRVFNRGEDTPMLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIAIVSATCGGVAFAFAGQPVITGYLLAGSIVGPGGFNFINEMVQVETVAQFGVIFILFALGLEFSMTKLRVVRSVAVLGGLLQIFLFMCMCGFTVSLCGGKASEGIFVGAFLSMSSTAVVLKFLMEKNNTNALHGQVTIGTLILQDCAVGLLFALLPVLGGTSGVFQGVLSMTKLLVTLIAFLSILSILSRTCLPWLLKLMISLSSQTNELYQLASVAFCLIVAWCSDKLGLSLELGAFAAGVMIATTDLAQHTLEQIEPICNLFAALFLSSIGMLIHVHFLWNHVDILVASVILVIVIKTIIIASVVKGFGYNNKTSVLVGMSMAQIGEFAFVLLSRASNLHLVEGKLYLLLLGTTALSLVTTPLLFKLIPAVVHLGVLLRWFSPDSAVEIGYKVDNLLRSDSAKQRIVLMDKEARDC* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3560 581 PANTHER K(+) EFFLUX ANTIPORTER 6 13 580 - -
Tpr1g3560 581 Pfam Sodium/hydrogen exchanger family 162 531 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Tpr1g3560 581 Gene3D - 155 538 IPR038770 -
Tpr1g3560 581 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 13 580 IPR045158 GO:0015386|GO:0071805|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3560 Tpr-Chr1 39739416 39747723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3560 56 579 Antiporters AT5G11800 79.434 0.0 835
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3560 - - gmx:100811030 936.406