Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3554 ATGGCTTACAGCAACAACAATGTTTGTGATCATTTATCACTAGGTTTATGCCGTTGTACAACAACAACAACAACTATTGAGACAAAATTCTTGAATTCTTCCAACAAAAAGAGGAAACTTAAGCAACAAGCAACTGATGGTGCAACAAAGAAGAAAACAAAGAAGAAGAGATGCAATGATGATATAGGGAGAAATTGGGGTTACTCAACTAAGTTGATGCTATATGATGATCCTTGGAAGGTTAAGAAAGTGTTGGAAAAGAGTGATGTTGACCATTCGAGTAGACTATTGCTCGATAAAATTTTGGTTGAGGATTTGATGTTGCCTGTGCTGAGTGTTAATGCTGCGAAAGAAATTCAAATGAAAATATGGGATATTGACACTAAATCTATGCACTCTCTCAAACTCAAGAGATGGGGTTCAGGAAGCTATGTTTTAATTGACGGATGGGTCAGAGATTTTGTAGCTAGGAGGGGCTTACAGAAAGGGGATGAGATTGGTCTTCATTGGGATCGATACAACCGACATTTTAATTTCACTGTTTTTCAAATCTTCAAGCCAATCAAGATAGACAAATAG 579 0.3696 MAYSNNNVCDHLSLGLCRCTTTTTTIETKFLNSSNKKRKLKQQATDGATKKKTKKKRCNDDIGRNWGYSTKLMLYDDPWKVKKVLEKSDVDHSSRLLLDKILVEDLMLPVLSVNAAKEIQMKIWDIDTKSMHSLKLKRWGSGSYVLIDGWVRDFVARRGLQKGDEIGLHWDRYNRHFNFTVFQIFKPIKIDK* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3554 192 MobiDBLite consensus disorder prediction 37 56 - -
Tpr1g3554 192 CDD B3_DNA 79 182 IPR003340 GO:0003677
Tpr1g3554 192 Gene3D - 78 182 IPR015300 -
Tpr1g3554 192 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 182 - -
Tpr1g3554 192 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 182 - -
Tpr1g3554 192 SUPERFAMILY DNA-binding pseudobarrel domain 77 182 IPR015300 -
Tpr1g3554 192 MobiDBLite consensus disorder prediction 39 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3554 Tpr-Chr1 39710276 39710920 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3554 81 162 B3 DNA Binding Superfamily AT1G20600 39.535 6.93e-06 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3554 - - cam:101505348 176.792