Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3548 ATGGCAGAAACTGCAGTATGGTTTGTTCTTAAACAAGTATACCAACTACTAAAAGAAGAAGCAAAGTTAGTGAAATATGTACGAAAAGACTTTGAAGAAATTAAAAATGAACTAGAGTTTATCCGCGTCTTCTTAAAAGACGCGGATAAAAGAGCCACAACAGAAGAATTAGGAATCAAACTTTGGGTGAAACAGTTGAGAGAATTATCTTTTCACATTGAAGATGTCATTGATGCATACATCATGGATGTAGTAAATGCAACACATCATCATGATCTTCATGATGATGGATATATAGGGAAATTCCAAAGTGTTATTGGATTGATGAAATCGAAAACCCTAACCCTAAAACCACGTCATCGGATAGCAACTGAGATTCAAGAGATCAAATTGAGGATTTATGGAATCAAAGAAAGAATTGAAAGATACAATTTTCAATTCTCTGAACAGCAAGAAGGATTGTCGATTAAGTATCCTGATCGGTTGGGTTCGCTTTTCGTTGATGAAGGTGAAATTGTGGGGTTTGAGAAACCTAAAGATGAAATTGTTGGTTGGTTGGTTGATGGAGAAGAAAAAAGTCGGTGTGTGATTTCGGTTGTTGGAATGGGGGGAGTAGGGAAAACAACTCTTACTAAAAATGTTTTTGATGATCAACAAGTGAAAGGTTGCTTTGATTGTCGCGCATTTCTCGTGGTTTCTCAATCATATAGTGTTGAAGCTTTGGTGAGAAATATGATGATGCAGTTTTCTGAAGAAACTAAAGAGCCTCTTCCTCAAGGTATAAACATGATGGACAAGACGACACTCATAACTGTTGCAAGGTCGTACTTGCAGAGCAAGAGGTATGTGATTTACTTTGATGATGTATGGAAAGTAGATTTTTGGGACGAGATCCAACTTGCCATACCAGATAACAAGAAAGGAAGTAGGATAATGATCACAACCAGGAATTTGGATGTTGCCAACTATTGTAGGAAAGATTCTCGTGTTCAAGTGCACAAGTTGCAACCCTTGCCTCCAAACAAAGCATGGGAACTCTTTTGCAACAAGGCGTTTCGATTTGATTTCGATGGAATCTGTCCATCAGAGCTGAAAGATATATCCGACGAAATCATTCAAAAATGCGAGGGGTTGCCGCTTGCAATTGTGGCTATAGGAGGTCTCTTGTCAACTAAAGATAAAACTGTTTCTGAGTGGAAAAAACTATGCCAAAATCTAAGTTCGGAGTTAGACCGTAATCCACATTTAGCTAATTTAACAAGAATTTTAGGCATGAGTTATGATGACTTACCGCATTATTTGAAATCATGCATCTTGTATTTTGGTATATACCCAGAAGATTACTCAATTAGGAGTTCAAGGTTGATTCGACAATGGATAGCGGAGGGGTTTGTTAAACATGAAGTGGGAAAATCTTTGGAGGAAGTTGGAGAAGAATATTTGACAGAGTTGATCCACAGAAGTTTGGTTCAAGTCTCCTGTGTTCACTATGATGGTACAGCTACAAGTTGCCGAATCCACGATCTGTTACGAGAAATGATCATGAGAAAAATGAAGGATTTAAGCTTTTGTCATGTTGTGGATGAAGATAATCATGAACAAATCTCTGATGTAACGATTAGGAGATTGGCTATAAAAACCAGTTCCAACAACATGCTAAGGAGCATTGAAAACTTTCCCCTACGTTCCCTATATATATTCGATGTTTTAATAAAATTTTCTGATTACTTTGGGAGTAAATTCTTTGCAAAGTCTAAGCTTTTGAAAGTATTGGACTTGGAAGGTGCTTTGCTGGACTATGTTCCTGATGATATTGGAAACAGGTTTCACTTAAAGTACTTGAGCTTAAGATATACAAATGTCAAGAATCTTCCAAAATCAATTGGCAAACTACAAAATCTAGAGACTTTGGATCTAAAGGGAACACTAATTCGCGAGTTACCAAGTGAAATAAATAAACTTACAAAGTTGCGCCATCTTTTGGTTTACAACAGAAGAACATATTCAAGTATCAGCGGCGAAAGTGGGGTGAGAATGATGGAAGGTTTTGGAGGCATGATAGTTTTGCAAAAACTTTATCATGTAGAGGTAGACCATGGCGGGTTGAACCTAATAGCAGAGTTGAAAAAGCTCAAACAATTAAGAAAGTTGGGATTAAAGAATGTAAAGAGAGAATATGGAAATGCACTTTGTGAGTCAATAGAGGAAATGAAATTCCTTGAATCACTTCATATTAGTGCAATAAGTGAAAATGAAGTCATAGACTTGCAATTTATTTCATCTCTACCTCAACTTAGACAACTTCACTTGTTTGGCTGCTTAGAAAAGCTTCCGAATTGGGTTCCAAGACTTGATCAACTTGTTACGTTGTTGATTCGTTTTTCAAAGTTAAAGGATGATCCTTTAAAGTTACTTAAAGATTTACCGAACTTGTTGTGTCTTGCAATGGTGTGTGATGCTTATGATGGAGAAATGTTGCACTTTGAAGTTGGATTTAAGAAGCTGAATAAATTATATCTTGTGCAGTTGAATAACTTGAATTCCATTTTAATAGATAATGAAGCTCTTCCTGCTCTTAAACTAATTGAAATGGCTCACCTCCCCAAGCTAAAAGAGATTCCCCCTGATATTCATCTGCTAAAGAACCTTGAAACTCTGCGTTTGATTGATACGCCTCATGAGTTCCACCAAAGCATTGATCCAAATGGTGGATCCAAGAACTGGGTCATTGAACACGTGCAAATGGTAACCATTGTAGAGAGGGTTGGTCCAAATCCAAATTCTTTCGACTTCAGCTATCGTACTTTTCGTCATCCAAAGGTTACATGA 2829 0.3701 MAETAVWFVLKQVYQLLKEEAKLVKYVRKDFEEIKNELEFIRVFLKDADKRATTEELGIKLWVKQLRELSFHIEDVIDAYIMDVVNATHHHDLHDDGYIGKFQSVIGLMKSKTLTLKPRHRIATEIQEIKLRIYGIKERIERYNFQFSEQQEGLSIKYPDRLGSLFVDEGEIVGFEKPKDEIVGWLVDGEEKSRCVISVVGMGGVGKTTLTKNVFDDQQVKGCFDCRAFLVVSQSYSVEALVRNMMMQFSEETKEPLPQGINMMDKTTLITVARSYLQSKRYVIYFDDVWKVDFWDEIQLAIPDNKKGSRIMITTRNLDVANYCRKDSRVQVHKLQPLPPNKAWELFCNKAFRFDFDGICPSELKDISDEIIQKCEGLPLAIVAIGGLLSTKDKTVSEWKKLCQNLSSELDRNPHLANLTRILGMSYDDLPHYLKSCILYFGIYPEDYSIRSSRLIRQWIAEGFVKHEVGKSLEEVGEEYLTELIHRSLVQVSCVHYDGTATSCRIHDLLREMIMRKMKDLSFCHVVDEDNHEQISDVTIRRLAIKTSSNNMLRSIENFPLRSLYIFDVLIKFSDYFGSKFFAKSKLLKVLDLEGALLDYVPDDIGNRFHLKYLSLRYTNVKNLPKSIGKLQNLETLDLKGTLIRELPSEINKLTKLRHLLVYNRRTYSSISGESGVRMMEGFGGMIVLQKLYHVEVDHGGLNLIAELKKLKQLRKLGLKNVKREYGNALCESIEEMKFLESLHISAISENEVIDLQFISSLPQLRQLHLFGCLEKLPNWVPRLDQLVTLLIRFSKLKDDPLKLLKDLPNLLCLAMVCDAYDGEMLHFEVGFKKLNKLYLVQLNNLNSILIDNEALPALKLIEMAHLPKLKEIPPDIHLLKNLETLRLIDTPHEFHQSIDPNGGSKNWVIEHVQMVTIVERVGPNPNSFDFSYRTFRHPKVT* 943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3548 942 SUPERFAMILY L domain-like 518 916 - -
Tpr1g3548 942 CDD RX-CC_like 2 138 IPR038005 -
Tpr1g3548 942 Gene3D - 427 518 IPR036388 -
Tpr1g3548 942 PRINTS Disease resistance protein signature 196 211 - -
Tpr1g3548 942 PRINTS Disease resistance protein signature 276 290 - -
Tpr1g3548 942 PRINTS Disease resistance protein signature 375 389 - -
Tpr1g3548 942 PRINTS Disease resistance protein signature 629 645 - -
Tpr1g3548 942 Gene3D Ribonuclease Inhibitor 548 905 IPR032675 -
Tpr1g3548 942 Pfam Rx N-terminal domain 6 87 IPR041118 -
Tpr1g3548 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 441 IPR027417 -
Tpr1g3548 942 Pfam NB-ARC domain 176 429 IPR002182 GO:0043531
Tpr1g3548 942 Gene3D - 338 426 IPR042197 -
Tpr1g3548 942 Gene3D - 165 332 IPR027417 -
Tpr1g3548 942 PANTHER - 28 897 - -
Tpr1g3548 942 PANTHER DISEASE RESISTANCE PROTEIN RP 28 897 IPR044974 GO:0006952
Tpr1g3548 942 Gene3D - 4 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3548 Tpr-Chr1 39659431 39663691 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3548 194 394 WRKY Transcription Factor Family AT5G45050 27.363 3.16e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3548 K13457 - gmx:100801561 957.592