Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3547 ATGACTCCTGTTTCACTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCATCAATTTTTCTCCTATTAATCAGGACCCTCCAACCTTGTTTAATTTGCTTGGAGGAGACTATACTGATCAAGATCATGATCATCATCAGGATCATGGTAAGCTGATATTTGAACAAGATGGATCATCATCAAACAATCATGAACAAGTCTATAATAATTCATCAAGTGATCCAAGCAGTGCACGTGACACAAATTTATCATCTTCCTTAGAAGAAGAAAGTGGTCACGGGTCAGAAAAATGGATGTCTTCAAAGATGAGGTTGATGAAAAAAATGATCAACACAACAACTGCTACTACTGATGATGCTACCAAAACTCCAATCATGAGATCAAGTAATAACAGTGCTGCTGACAAACAAATTACCACAACTCCAATGATGAATCCAAGCAATTATCTAAGGCAAAGAAGCCCTCATAGTAATAACAGCGGCGGTAACAACATTATTAGGGTTTGCTCAGATTGTAACACAACTACTACCCCACTTTGGAGAAGTGGCCCTATGGGCCCTAAGTCGCTTTGCAATGCTTGTGGAATTAGACAAAGGAAGGCAAGAAGGGCAATGGCAGAAGCTGCAAATGGTTTGGCCACTCCAACAAAGACTAACAAGGAAAAGAAGCCTCGTGTGAACAATTCTACACAATTCAAGAAAAAGAGCAATTCTATCACTACTACTACTCCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAGCTTGAATCTTATGCATTAAATTTGAGAAACAACTCGGATTTTGAAGATATGTTTCCTTCTGATGAAGCAACTGAGGCGGCTTTACTTCTTATGCGCATATCTTCTGGCAAACTTTTCAATCTTAATTAG 912 0.3893 MTPVSLNPPGPNSLLQGQNQFINFSPINQDPPTLFNLLGGDYTDQDHDHHQDHGKLIFEQDGSSSNNHEQVYNNSSSDPSSARDTNLSSSLEEESGHGSEKWMSSKMRLMKKMINTTTATTDDATKTPIMRSSNNSAADKQITTTPMMNPSNYLRQRSPHSNNSGGNNIIRVCSDCNTTTTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATPTKTNKEKKPRVNNSTQFKKKSNSITTTTPTTSAGSSSQDVKKLESYALNLRNNSDFEDMFPSDEATEAALLLMRISSGKLFNLN* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3547 303 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 43 297 - -
Tpr1g3547 303 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Tpr1g3547 303 MobiDBLite consensus disorder prediction 64 93 - -
Tpr1g3547 303 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 207 - -
Tpr1g3547 303 MobiDBLite consensus disorder prediction 64 103 - -
Tpr1g3547 303 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Tpr1g3547 303 MobiDBLite consensus disorder prediction 234 259 - -
Tpr1g3547 303 CDD ZnF_GATA 172 209 IPR000679 GO:0006355|GO:0043565
Tpr1g3547 303 SMART GATA_3 167 227 IPR000679 GO:0006355|GO:0043565
Tpr1g3547 303 Gene3D - 169 245 IPR013088 GO:0006355|GO:0008270
Tpr1g3547 303 MobiDBLite consensus disorder prediction 213 259 - -
Tpr1g3547 303 ProSiteProfiles GATA-type zinc finger domain profile. 171 203 IPR000679 GO:0006355|GO:0043565
Tpr1g3547 303 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 43 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3547 Tpr-Chr1 39635185 39638335 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3547 89 299 C2C2-Gata Transcription Factor Family AT4G26150 36.170 7.83e-27 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tpr1g3547 GATA 2.6e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3547 - - mtr:MTR_1g016170 327.02