Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3546 ATGTTAACTCTTTTTCATGATTTAGTAGAATTGATGTCGAACTCGAGTTGCCAAATCAGTGAGTCAGACCCATGTCGCGACGAGTCAACAGCTTTGATTCTAAAATTCGTTGCTATGGCAACAATTCTAGTAACAGGAATTACCGGAATCGCGATACCGTTATTAAGAAACCGGCGAGGATCAGGCGAGGTATTACAAGCGGCGAAGGCGTTTGCGGCGGGAGTAATATTAGCGACGGGGTTTGTTCACATGCTTAGAGATGCGACGGAAGCATTTAATCATCGTTGTTTGAAATCTTACTCGCACGCGTGGTCAAAGTTTCCTTTTGCCGGTTTTTTCGCTATGGTTTCAGCTTTGTTTACTCTTTTAGTTGACTTTATTGCAACTCAGTATTATGAGAGGAAATTGAGAGAAGATAGTAGCAGTGGCGGCTCTGAGCACGGTGTAATCAATGATTTGGAGGAGGAGTTGTTGAGATCGGAGATTGTGGAGGTTAAGGATGTTAGGGAAGAGAGGACTATTGTGGGGATGCATGCTCATGGATCCCACCATAGACATTCTCATCACCAGAACCATGATCATGATGATCATGGTCATGGTTCCGGTGATGATCATGGTCATTCGCATTCTCATTCGTTTGATGATGTGGAAGGTAGCATTCGCCATGTTGTTGTTTCGCAGGTATTGGAACTTGGAATAGTTTCACATTCCATGATAATTGGGTTATCACTAGGAGTTTCACAAAGTCCATGTACAATGAGACCCTTAATTGCAGCATTATCCTTCCACCAATTCTTTGAAGGATTTGCACTTGGTGGTTGCATATCAGAAGCCAAATTCAAGACATCCTCAGCAACAATAATGGCATGTTTTTTTGCACTAACAACACCAATTGGTGTTGCAATTGGAACATGTATTGCCTCAAATTTCAATCCTTATAGTCCAGGAGCTCTTATTACAGAAGGTATCTTGGACTCTTTGTCAGCTGGAATTTTAGTTTATATGGCTTTGGTGGATTTAATAGCTGCTGATTTTCTTAGTAAGAAAATGCGTTGTAGCTTTCAGCTTCAAATTGTGTCGTTTTGTTTGCTTTTTCTTGGGGCTGGATGTATGTCTTCTCTTGCACTTTGGGCATAA 1137 0.4151 MLTLFHDLVELMSNSSCQISESDPCRDESTALILKFVAMATILVTGITGIAIPLLRNRRGSGEVLQAAKAFAAGVILATGFVHMLRDATEAFNHRCLKSYSHAWSKFPFAGFFAMVSALFTLLVDFIATQYYERKLREDSSSGGSEHGVINDLEEELLRSEIVEVKDVREERTIVGMHAHGSHHRHSHHQNHDHDDHGHGSGDDHGHSHSHSFDDVEGSIRHVVVSQVLELGIVSHSMIIGLSLGVSQSPCTMRPLIAALSFHQFFEGFALGGCISEAKFKTSSATIMACFFALTTPIGVAIGTCIASNFNPYSPGALITEGILDSLSAGILVYMALVDLIAADFLSKKMRCSFQLQIVSFCLLFLGAGCMSSLALWA* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3546 378 MobiDBLite consensus disorder prediction 189 212 - -
Tpr1g3546 378 MobiDBLite consensus disorder prediction 179 212 - -
Tpr1g3546 378 PANTHER ZIP ZINC/IRON TRANSPORT FAMILY PROTEIN 12 378 - -
Tpr1g3546 378 Pfam ZIP Zinc transporter 33 375 IPR003689 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Tpr1g3546 378 TIGRFAM zip: ZIP zinc/iron transport family 17 378 IPR004698 GO:0005385|GO:0016021|GO:0071577
Tpr1g3546 378 PANTHER ZINC/IRON TRANSPORTER 12 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3546 Tpr-Chr1 39627809 39630767 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3546 17 378 Inorganic Solute Cotransporters AT1G10970 61.126 8.16e-144 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3546 K14709 - gmx:100809426 449.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3546 1 39627809 39630767 Tpr7g0800 7 7057851 7060004 PCT