Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3538 ATGATGAAAGGTTTGTCGGTGGATGAAAATATGTCAAATTTGACATCTGTTTCAAGTGAAATAAGTCCTTCTAATTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAAACCAAAAGGAAGAGAAATCTTCCTGGTCATCCAGACCCTGAGGCAGAAGTGATAGCTTTGAGTCCCCAAACTTTGTTGGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAAAGAGGACATAATTTACCATGGAAACTAAAGAAAAGAAACAGCAAAGAAATCATAAGAAAGAAAGTATATGTTTGTCCAGAATCAACATGTGTTCACCATGAACCTTCAAGAGCACTTGGTGACTTAACTGGAATCAAGAAGCACTTTTTTAGGAAGCATGGTGAGAAGAAATGGAAGTGTGAGAAGTGTTCTAAACGTTATGCAGTTCAATCTGATTGGAAAGCTCATTCTAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTTTTCTCAAGAAGGGACAGTTTCATCACTCATAGAGCCTTCTGTGATGTTTTATCACAAGAGAGTGCAGCACTAAACCCTCTTTTCTCTTCTCATAGTTTCCAACTACCATCCCTAAAAAAAGAACAAGACTTCAATATTATAAGACCAGAAATAATACCATCATGGTTCCCTTCTTCAAGTACACCACAACAATTACTCCCTACTCATTTTAGCCATTATCATCAAAACCCTAACCCTACAAATTTGTTTCATTCAAATTTCAACTCCAACAATATTATCACTACTTCTTCTCCTCACATGTCTGCCACTGCTTTACTGCAAAAAGCATCACAAATTGGTGTAACAGTAAGCAAAACAGAACCTTGCATACCCCACTTAATGCAAACTCACGTGCCTTATATGACTTCACGTGATCATGAAATAGTGAATAGTACTGCTGGTTTTTCTCACTATTTGGCTTCATATGGAAATAAAGCTGTTACTAATACAGAAGAATCTTCTCTTTTGCTGCATGATGTGATATTTGGTAATGAGAATTCTTCATCACATTCATCACAATTTGAAAGTGTTAATGCTGCTATGAGTATGAGGGGAATGTTTGATCCACAAATAGATAATAATAACTTTCAGAGTCAACAATATTCCAATTTTGGTAAAAGCAACATTATTAAGAGTGGTGGTGCCATAGTCAATGATGATGAAATGACAAGGGATTTTTTGAGTCTTGGTGCATTTTCACAAAGAGATGACTTGTTGTTTAGTATTTCTGGAATTGATGATCCTTTGGGTTCTTTATCATATGGTAAGCAAAATCAAAACCAAACTCCTTGGCGTCGAGGCTAA 1389 0.3607 MMKGLSVDENMSNLTSVSSEISPSNSATKNGKASTNLEPQTKRKRNLPGHPDPEAEVIALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNSKEIIRKKVYVCPESTCVHHEPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESAALNPLFSSHSFQLPSLKKEQDFNIIRPEIIPSWFPSSSTPQQLLPTHFSHYHQNPNPTNLFHSNFNSNNIITTSSPHMSATALLQKASQIGVTVSKTEPCIPHLMQTHVPYMTSRDHEIVNSTAGFSHYLASYGNKAVTNTEESSLLLHDVIFGNENSSSHSSQFESVNAAMSMRGMFDPQIDNNNFQSQQYSNFGKSNIIKSGGAIVNDDEMTRDFLSLGAFSQRDDLLFSISGIDDPLGSLSYGKQNQNQTPWRRG* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3538 462 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 27 433 - -
Tpr1g3538 462 MobiDBLite consensus disorder prediction 1 52 - -
Tpr1g3538 462 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 27 433 - -
Tpr1g3538 462 SUPERFAMILY beta-beta-alpha zinc fingers 70 168 IPR036236 -
Tpr1g3538 462 SMART c2h2final6 113 143 IPR013087 -
Tpr1g3538 462 SMART c2h2final6 71 93 IPR013087 -
Tpr1g3538 462 SMART c2h2final6 148 168 IPR013087 -
Tpr1g3538 462 MobiDBLite consensus disorder prediction 8 42 - -
Tpr1g3538 462 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Tpr1g3538 462 Pfam Zinc-finger double-stranded RNA-binding 71 93 IPR022755 -
Tpr1g3538 462 Gene3D Classic Zinc Finger 67 94 - -
Tpr1g3538 462 Gene3D Classic Zinc Finger 105 196 - -
Tpr1g3538 462 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3538 Tpr-Chr1 39577485 39581242 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3538 7 301 IDZ Gene Family AT1G55110 57.492 3.17e-118 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g3538 zf-C2H2_jaz 4.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3538 K25870 - vvi:100257789 441.425