Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3537 ATGAATTCTCTGTCACTTCTCCACAACACAAATGCAACAATCCCAACACACACTCTCCACTTCCACTCCTTCATCTTCTCCAAACCCACCCCTCCCTTCATCTCCCTCAAACCAAAACCCTCAACAACAATCCAATGTTGCAACAACAACAACAACATCATCGACATAGACATGGTAAAAACCAAACAAGGAACCTACGTACAAAAACAGAACAAAGTCGTTGTACTCTGGGACCTCGACAACAAACCACCACGTGGACCACCGTACAACGCCGCACTCTCTCTCAAAACCCTCGCCGAAACTTTCGGCCATCTCACCGACATCTCCGCTTACGCTAACCGTCACACCTTCACCCATCTCCCTGAATGGGTCCTCAATCAACGCCGTGAACGCAAAAACCTCGATTTCCTCGAACGTAAAGGTATCATTAATCCCTCCGAACCTTACATATGTTCTGTTTGCGGTCGTAAATGTAAAACAAACGTAGATCTTAAGAAACACTTTAAGCAACTTCATGAAAGAGAGAGACAGAAAAAGGTGAATCGTTTGAATTCTTTGAAAGGGAAGAAGAGACAGAAGTATAAGGAAAGATTTGTTAGTGGTGATTCAAAGTATAATGACGCGGTTCGAGGGATTTTAACGCCGAAAATTGGTTATGGTTTAGCGTCTGAGTTGCGGCGGGCGGGTGTTTTTGTTAAGACTGTTGAGGATAAACCTCAGGCTGCTGATTGGGCTTTGAAGAAACGGATGATGCATTCATTGGATAGAGGGGTTGATTGGTTGTTTTTGGTTTCGGATGATTCAGATTTTAGTGAGATGTTGAGGAGGGCTAAGGAGGCGAATTTAGGGACTGTTGTTGTTGGAGATGTTGATAGAGCTTTAGGTAGACATGCTGATTTGTGGGTTTCTTGGGATGATGTTGAGAATGGTGAGGTTAAGGAAAAGGATTTGGTTCCTAAGAGTAGAGAGGGGAGGAGAAGAACAAATGCATCGACTACTACGACAATGGATGGTTTTGGTGATGTGTTGATTTTTCATGACGATGAGGAAATGGAAATGGGAGGAGATTTTATGTTGGAGTATAGCGACGATGAGGATTTTGATGTCGATTCTGATGAAGAAGATGATGATGGGTTTTATATTTATTGA 1149 0.4299 MNSLSLLHNTNATIPTHTLHFHSFIFSKPTPPFISLKPKPSTTIQCCNNNNNIIDIDMVKTKQGTYVQKQNKVVVLWDLDNKPPRGPPYNAALSLKTLAETFGHLTDISAYANRHTFTHLPEWVLNQRRERKNLDFLERKGIINPSEPYICSVCGRKCKTNVDLKKHFKQLHERERQKKVNRLNSLKGKKRQKYKERFVSGDSKYNDAVRGILTPKIGYGLASELRRAGVFVKTVEDKPQAADWALKKRMMHSLDRGVDWLFLVSDDSDFSEMLRRAKEANLGTVVVGDVDRALGRHADLWVSWDDVENGEVKEKDLVPKSREGRRRTNASTTTTMDGFGDVLIFHDDEEMEMGGDFMLEYSDDEDFDVDSDEEDDDGFYIY* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3537 382 CDD PIN_LabA-like 159 289 - -
Tpr1g3537 382 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 177 IPR013087 -
Tpr1g3537 382 PANTHER OS06G0166200 PROTEIN 46 352 - -
Tpr1g3537 382 Coils Coil 169 189 - -
Tpr1g3537 382 ProSitePatterns Zinc finger C2H2 type domain signature. 151 172 IPR013087 -
Tpr1g3537 382 Gene3D - 65 307 - -
Tpr1g3537 382 PANTHER - 46 352 - -
Tpr1g3537 382 SMART c2h2final6 149 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3537 Tpr-Chr1 39565343 39566883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3537 4 359 C2H2 Transcription Factor Family AT5G52010 57.702 1.72e-158 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tpr1g3537 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3537 - - tcc:18591156 457.988