Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3517 ATGAAAATGATAAAAAAAAAAAAATCAGATTCACGGTTCTCCTCTTTCTTCTTCTTCCTTTTGACGATAGTAAGTAACTCTTCCCTGCGAAAATATTCCATGGGCTGGGGTCACATCGGAATACATGGCTCAGATTCCGGTAACAACGCCGATGCAGGTCCGAGCACCAGCACGCCGTTACCACGGCAGTTTCCTCCGGCAGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAATACGCCTCTTTCGTTTACGAAGCCTGTCGCGACGCCTTCCGCCAACTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAACTTTTAGGACAAATGCTTTACTATGTTCTTACAACAGGCTCTGGACAACAAACACTTGGAGAAGAATACTGTGATATCACTCAGGTTGCAGGAACTTATGGACTTCCTCCTACACCCGCCAGACGTGCTTTATTCATTGTATACCAGTCGGCGATTCCATACATTGCAGAACGAATTAGTTCTAGAATTGCTTCCCGGGGCATTATCCTTGCTGACTATGAGTCTGCTGAGAGTTATTATGGTGAAAATGCCCGTGGAAGTAGTAATTCTCGGGTTTCTGCCGCAAGTGAACTTTCTCCTTTGTCTACTTCAGGGCAGTCTACTTCAACTCTGACGAGGTTGAAGGAGAAACTCGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGTGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTCATGTTGTTTTACTTTGAAGGTCTCTATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATAGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTCTTGATTCAACTTTGTGTAATAGCTGCTGAAGCGCTGCGCCGAAGAAATTTTACATCACTTGCCGGTTCAGTTCATCAGGCATCCTTTGCAACCGACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATCTTCAGAAGCTGACAATGGAAGTTGGATCTCTGGATCTTCATCTTCTGAGCAGCTTGCATCTAGTGGGGTTAGCAAATGCACGCTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCCTGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGTACCCCTATAACACACTCAAGTCTAGTTTGTATTTATCATTCAGATTTCTAG 1296 0.446 MKMIKKKKSDSRFSSFFFFLLTIVSNSSLRKYSMGWGHIGIHGSDSGNNADAGPSTSTPLPRQFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRQLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGTYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILADYESAESYYGENARGSSNSRVSAASELSPLSTSGQSTSTLTRLKEKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEALRRRNFTSLAGSVHQASFATDHTSAGHGLPVLNEEGNLASSEADNGSWISGSSSSEQLASSGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCIYHSDF* 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3517 431 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 61 428 - -
Tpr1g3517 431 Pfam Pex2 / Pex12 amino terminal region 79 314 IPR006845 -
Tpr1g3517 431 CDD RING-HC_PEX10 376 415 - -
Tpr1g3517 431 PANTHER PEROXISOME BIOGENESIS FACTOR 10 61 428 - -
Tpr1g3517 431 SMART ring_2 377 414 IPR001841 -
Tpr1g3517 431 ProSitePatterns Zinc finger RING-type signature. 392 401 IPR017907 -
Tpr1g3517 431 SUPERFAMILY RING/U-box 376 420 - -
Tpr1g3517 431 Pfam Zinc finger, C3HC4 type (RING finger) 376 420 - -
Tpr1g3517 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 352 428 IPR013083 -
Tpr1g3517 431 ProSiteProfiles Zinc finger RING-type profile. 377 415 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3517 Tpr-Chr1 39348191 39354023 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3517 369 427 C3H Transcription Factor Family AT4G28270 33.333 1.55e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3517 K13346 - gmx:100783914 659.833