Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3507 ATGGAAGTGTTGTTATATGTGGTTTCAGTTCCATTAAGAGTAGATAACTTAGTCTGCGATAACTCAATCATAGCTACATACATGGATGTATCCAAATTTAATTCTGTAACTAAGGTTTCCACCGAGACAGTTGTAAGTTCAGACGATTGTCATAATAATGGTGGCAATTTGGATGTTGAAATCGGTATTAAAGAAGTCACGCCACCGGAATTAGATAAGAAAGGAGAAAGTCCTTTGATGGATATGATATCCGAAAGTAAAAGTGTTTTGGTTGCTGGTGATGTAGGTTTAGCTCCTGAAAGTGAGGAGGATGATTCATTATCATTGGAAGGTGAACAGTTTATTGATAGCTCGTGTTCTCTATCAGTTGTTAGTGAAAACAGTAGTATAGGTGGAGAGGAGTTTATCGCTTCTGATGCTACTTCAGAAGTTGGGACACCATGTTCGATAGACATGGAGAAGAGTATCGGTCCGGTCAATATTGTTGCTCCAGCTGCTGATTTGGGGGAGTCGAATGTTGACACAGATATTATGAGTGAACCCCTTGACGTGGCAGAGAGTTTGGACCAAGAAATTGGAGTTGAATCAGACCCAAAGCCTTCTACAGTTGTTGTTCATCAGCTGCCTCAGGAAGAGGGAACAAGTGTAACAGTTGTCCGGAGTGTTTTTGAATTGGATTATACCCCGTTATGGGGATTCATATCGCTATGCGGAAGAAGACCTGAAATGGAAGACGCATTTGCAACTGTTCCTCGATTTTTGAACATTCCCATTCAAATGCTAATCGGTGATCGAGTACATGACGGAATAAACCGGTCTTTTAGGCCACAAATGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTGGCAAATTATTGTCGCGAACGCATCCATTTGGCCTTGGCTGAGGAAATAGAATTTGTTAAGGAAGGTCTAATCAATGGTAGTATTAAGGATGGTTGCCAAGATCAATGGAAAAAAGCTTTCACCAATTGTTTCTTAAAGGTTGATGCTGAAATTGGCGGAACAACTAATAATGAAGCTATTGCGCCAGAAACTGTTGGCTCCACTGCTGTTGTTGCTCTTATATGTTCATCTCATATTATAGTTGCGAATTGTGGTGATTCCAGAGCCGTTCTTTGTCGTGGCAAAGAACCAATGGCGTTATCAGTGGACCATAAACCGAACAGAGAAGATGAATATGCAAGAATTGAAGCAGCCGGAGGAAAGGTGATACAATGGAATGGCCATCGTGTATTTGGTGTCCTAGCAATGTCAAGGTCTATCGGTGACAGATATTTGAAACCGTGGATTATTCCGGATCCAGAAGTTCAATTCATTCCTCGTGCAAAAGAGGACGAATGTCTCATTTTGGCTAGTGATGGTCTGTGGGATGTGATGACAAACGAAGAAGTGTGTGATCTGGCTCGAAAACGTATACTTCTTTGGTACAAGAAAAACGGCTTAGAACTACCCTCAGAAAGGGGAGAGGGAAGTGATCCTGCTGCACAAGCAGCAGCAGAGTTTCTGTCGAATCGCGCTCTTCAGAAAGGAAGCAAAGACAACATCACCGTGATTGTTGTCGATCTAAAACCTCAACGCAAGTACAAGAACAAGACATGA 1635 0.4208 MEVLLYVVSVPLRVDNLVCDNSIIATYMDVSKFNSVTKVSTETVVSSDDCHNNGGNLDVEIGIKEVTPPELDKKGESPLMDMISESKSVLVAGDVGLAPESEEDDSLSLEGEQFIDSSCSLSVVSENSSIGGEEFIASDATSEVGTPCSIDMEKSIGPVNIVAPAADLGESNVDTDIMSEPLDVAESLDQEIGVESDPKPSTVVVHQLPQEEGTSVTVVRSVFELDYTPLWGFISLCGRRPEMEDAFATVPRFLNIPIQMLIGDRVHDGINRSFRPQMTHFFGVYDGHGGSQVANYCRERIHLALAEEIEFVKEGLINGSIKDGCQDQWKKAFTNCFLKVDAEIGGTTNNEAIAPETVGSTAVVALICSSHIIVANCGDSRAVLCRGKEPMALSVDHKPNREDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPDPEVQFIPRAKEDECLILASDGLWDVMTNEEVCDLARKRILLWYKKNGLELPSERGEGSDPAAQAAAEFLSNRALQKGSKDNITVIVVDLKPQRKYKNKT* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3507 544 ProSitePatterns PPM-type phosphatase domain signature. 281 289 IPR000222 GO:0043169
Tpr1g3507 544 PANTHER PROTEIN PHOSPHATASE 2C FAMILY PROTEIN 97 544 - -
Tpr1g3507 544 CDD PP2Cc 235 534 IPR001932 -
Tpr1g3507 544 Pfam Protein phosphatase 2C 276 527 IPR001932 -
Tpr1g3507 544 Gene3D - 217 544 IPR036457 -
Tpr1g3507 544 SUPERFAMILY PP2C-like 216 536 IPR036457 -
Tpr1g3507 544 ProSiteProfiles PPM-type phosphatase domain profile. 230 534 IPR001932 -
Tpr1g3507 544 PANTHER ALPHABET, ISOFORM E-RELATED 97 544 - -
Tpr1g3507 544 SMART PP2C_4 216 532 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3507 Tpr-Chr1 39264885 39269814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3507 1 544 PP2C-type Phosphatase Gene Family AT1G17550 48.307 1.42e-167 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3507 K14497 - gmx:100805281 825.854