Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3503 ATGACTACTACTACTAAAAAGATAACATGGAAATCTATGATCTTGATCTTAAATTGTTACAAGAGTAAATACCCTTTGGAGGAATCAAAAAAACAAGTTTTAAAACAAGGTTCTTTCCAAAGATTATGTTTATCTGATATAAGCAATTCAAGTTCAACTCAAGCTATTGAAGATCTTTCAATTTCTTTTGGTGGTTCTAATAAACTTCATGCATTCACACTTGAGGAGCTAAAAGAAGCAACACATAATTTCTCATGGAGTAATATGTTAGGTGAAGGTGGTTTTGGACCTGTTTATAAAGGCTTTGTTGATGAGAAACTTAGACATGGTTTAAAGGCTCAAACTGTAGCTGTTAAATGTTTGGATTTAGATGGTTTGCAAGGTCATAGAGAGTGGCTGGCAGAGATTATATTTCTTGGACAACTAAGTCATCCACATCTTGTGAAGTTAATTGGATATTGTTGTGAAGATGAGCATAGGCTTTTGGTGTATGAATACATGCCTAGAGGTAGCTTGGAGAATCAACTATTCAGAAGATACTCTGCTGCCATGCCATGGTCAACTAGGATGAAAATTGCATTAGGAGCTGCAAAGGGTTTGGCTTTCCTTCATGAAGCAGATAAGCCTGTAATATACAGAGATTTCAAAGCTTCAAATATCCTACTAGATTCGGATTATACAGCTAAATTATCAGATTTTGGACTAGCTAAGGATGGCCCTGAAGGCGAAGAAACACATGTAACGACACGCGTAATGGGAACACATGGTTATGCTGCTCCTGAGTACATCATGACAGGACACCTCACAACAAAGAGTGATGTGTATAGCTATGGAGTGGTTCTATTGGAATTGCTTACAGGAAGAAGGGTAGTGGAAAAATCTTCAGAATCAAGTAGAGGGAAGAATTTGGTGGAATGGGCAAGACCAATGTTGAGAGATCAAAAGAAGCTGCATAGAATCATAGACCGTAGACTTGAAGGACAATTTCCTATGAAAGGAGCATTGAAAGTTGCTATGTTGGCTTTTAAATGTTTGAGTCATCACCCAAATCCAAGACCTTATATGAGTGATGTTGTTAAAGTATTGGAACCACTTCAAGATTTTGATGATGTTTTCATAGGACCATTTGTCTATTTTGCTGTAAGTGAAAATGGTGATAAAGATCAAATTAGCACTCCTCAGCAAAGTAGATAA 1194 0.3677 MTTTTKKITWKSMILILNCYKSKYPLEESKKQVLKQGSFQRLCLSDISNSSSTQAIEDLSISFGGSNKLHAFTLEELKEATHNFSWSNMLGEGGFGPVYKGFVDEKLRHGLKAQTVAVKCLDLDGLQGHREWLAEIIFLGQLSHPHLVKLIGYCCEDEHRLLVYEYMPRGSLENQLFRRYSAAMPWSTRMKIALGAAKGLAFLHEADKPVIYRDFKASNILLDSDYTAKLSDFGLAKDGPEGEETHVTTRVMGTHGYAAPEYIMTGHLTTKSDVYSYGVVLLELLTGRRVVEKSSESSRGKNLVEWARPMLRDQKKLHRIIDRRLEGQFPMKGALKVAMLAFKCLSHHPNPRPYMSDVVKVLEPLQDFDDVFIGPFVYFAVSENGDKDQISTPQQSR* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3503 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Tpr1g3503 397 SUPERFAMILY Protein kinase-like (PK-like) 63 363 IPR011009 -
Tpr1g3503 397 Pfam Protein tyrosine and serine/threonine kinase 86 362 IPR001245 GO:0004672|GO:0006468
Tpr1g3503 397 ProSiteProfiles Protein kinase domain profile. 84 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tpr1g3503 397 Gene3D Transferase(Phosphotransferase) domain 1 167 372 - -
Tpr1g3503 397 PANTHER KINASE 1B 23 387 - -
Tpr1g3503 397 Gene3D Phosphorylase Kinase; domain 1 44 166 - -
Tpr1g3503 397 PANTHER OS01G0588500 PROTEIN-RELATED 23 387 - -
Tpr1g3503 397 CDD STKc_IRAK 90 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3503 Tpr-Chr1 39235390 39238739 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3503 70 362 Glycoside Hydrolase AT3G07070 52.365 9.48e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Tpr1g3503 PK_Tyr_Ser-Thr 5.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3503 - - gmx:100802636 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3503 1 39235390 39238739 Tpr1g3503 1 39235390 39238739 ECH
Tpr7g0753 7 6688772 6691884 Tpr1g3503 1 39235390 39238739 ECH
Tpr5g2226 5 43269351 43272126 Tpr1g3503 1 39235390 39238739 ECH