Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3501 ATGATGCACATGACACTATATTGGGGAAAAAACGTGACACTGTTATTTGATTCATGGACGACCGATTCATGGACGAGTTATATACTGAGTTTAATTGCATGTTTCGTGATTGCTACTTTCTACCAATATCTGGAGAATATTCGGATTCGGCTGAAGTTTTTTTCCGGCGAGGGAAGGGGTGGTTCTACGGTGGCAGAGATTCAGACTCCTCTTCTGGGGTTGAATAAGGTTTCTAGAAATAAGGTTGTGGAATCGGTTCTGTTTGGGGTTAATTCTGCGATTGGGTATTTGTTGATGTTGGCTATAATGTCTTTTAATGGTGGTGTTTTTGTGGCTATTGTTTTTGGTTTAACGGTTGGTTATTTCTTGTTTAGGAGTCAGGGTGAAGAAGAGTCTGCAATTGTTGTTGATAGTTCTTGTGCATGTGCTTAG 432 0.4028 MMHMTLYWGKNVTLLFDSWTTDSWTSYILSLIACFVIATFYQYLENIRIRLKFFSGEGRGGSTVAEIQTPLLGLNKVSRNKVVESVLFGVNSAIGYLLMLAIMSFNGGVFVAIVFGLTVGYFLFRSQGEEESAIVVDSSCACA* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3501 143 Pfam Ctr copper transporter family 4 124 IPR007274 GO:0005375|GO:0016021|GO:0035434
Tpr1g3501 143 PANTHER CTR FAMILY COPPER TRANSPORTER 1 143 - -
Tpr1g3501 143 PANTHER SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS 1 143 IPR007274 GO:0005375|GO:0016021|GO:0035434
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3501 Tpr-Chr1 39226098 39226866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3501 1 143 Inorganic Solute Cotransporters AT5G20650 55.405 3.32e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3501 K14686 - gmx:100795071 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3501 1 39226098 39226866 Tpr1g3501 1 39226098 39226866 ECH
Tpr7g0752 7 6686063 6686876 Tpr1g3501 1 39226098 39226866 ECH
Tpr2g3467 2 38027240 38027929 Tpr1g3501 1 39226098 39226866 ECH
Tpr5g2207 5 43046559 43048444 Tpr1g3501 1 39226098 39226866 ECH