Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3498 ATGAACACACACATGATTGATTCCAACATTCCTACTAGTAGTATCAATGTCACCCCAAATGACCACAACATATCTTGTTCCAACAATAACACTAGTACTAATAAATTATACAAAGGGGTGAGGAAAAGAAAATGGGGAAAATGGGTCTCTGAAATTAGGCTTCCAAATAGCCGTGAAAGAATATGGTTAGGATCATATGATACACAAGAAAAAGCTGCAAGAGCATTTGATGCAGCTCTTTATTGTCTACGTGGTCGCCATGCTAGTTTCAATTTTCCTAATACACCCCTTACCATCAATGTAGCTGTTCATCATGGTGTTGGTCTCAAATCTCTTTCACCACAAGAGATTCAAGAGATTGCTGCCAAGTTTGCCAATGATTACTCGCCACCAATTGAGTTGAGCAATCAAGAAGACGAAGAAGAAGAAGAAGAAGAAGAAGATCAACAAGTACCAATAGAGTCACAAAATGATGCCAATTCTTACTCATCATGTCCTCTTTATGACAATGAGAGTGATATGAGGAGGATGGATTGGACATTTGAGGATATGTTTGATAACATGAATGGTGTTGCTAATAGCATTGATTATAGCCTCTATAATGGGCTAGAAAATATGCAATACTCTAGTGAGCTACAATATTCTACTCAATCTTTTGAGGAACATAATAATGATGACCAAAATGAATGTGAAAATGCTTTTTCAGATCATTCATTTCTTTGGAGTTGGAATTTTTGA 738 0.3645 MNTHMIDSNIPTSSINVTPNDHNISCSNNNTSTNKLYKGVRKRKWGKWVSEIRLPNSRERIWLGSYDTQEKAARAFDAALYCLRGRHASFNFPNTPLTINVAVHHGVGLKSLSPQEIQEIAAKFANDYSPPIELSNQEDEEEEEEEEDQQVPIESQNDANSYSSCPLYDNESDMRRMDWTFEDMFDNMNGVANSIDYSLYNGLENMQYSSELQYSTQSFEEHNNDDQNECENAFSDHSFLWSWNF* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3498 245 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Tpr1g3498 245 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Tpr1g3498 245 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Tpr1g3498 245 CDD AP2 35 95 IPR001471 GO:0003700|GO:0006355
Tpr1g3498 245 ProSiteProfiles AP2/ERF domain profile. 36 93 IPR001471 GO:0003700|GO:0006355
Tpr1g3498 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 25 245 - -
Tpr1g3498 245 SMART rav1_2 36 99 IPR001471 GO:0003700|GO:0006355
Tpr1g3498 245 MobiDBLite consensus disorder prediction 128 164 - -
Tpr1g3498 245 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF018 25 245 - -
Tpr1g3498 245 MobiDBLite consensus disorder prediction 134 152 - -
Tpr1g3498 245 Pfam AP2 domain 37 85 IPR001471 GO:0003700|GO:0006355
Tpr1g3498 245 SUPERFAMILY DNA-binding domain 36 93 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3498 Tpr-Chr1 39192989 39193726 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3498 28 194 AP2-EREBP Transcription Factor Family AT1G74930 48.521 3.84e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Tpr1g3498 AP2 3.6e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3498 - - mtr:MTR_1g014800 304.293
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3498 1 39192989 39193726 Tpr1g3498 1 39192989 39193726 ECH