Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3493 ATGGAATCAGAGAATTTGATTAAACAAGAATTGGAAGAATTGCAGAAACAATTAGGGAAGAAACAAAAATTTGAAGACGCTGTTTCATCTCTCAAATCTCTTCTCCAACAATCATATCCATCAGCTTCTACCTCTCTCCGTAAATCTTTTTATACTGTTATATGCCGAGTTGCTACAGTGTTAAAGACGAGATATACAGCACCAGGTTTCTGGAGTGCTGGCTTGGGCCTTTTTGAGCAGGCTATATCGTTTGTTTCTGAACCTTCTGAGAAGGAGCACTTGAAGGCTTGCATTGCTCAGGCTAGGGAAAATTTGCATCTAGAAGACAACCCTTCGCAAACTTTGCAAACTGCAGTGAATCGTGAAAATAGAGGATATCTTTTTGAGGGGCACCTTACAGTAGATCAAGAGCCACCACAACCTGATTGGATGGTGCAGGCAAACCTCTTGGCAGCAGCTGCTAGACTATTTGAAGCCGAATCCTCTCAAGGTTTAGCAACAAATGGAAGCACAGAAGATGACGCTGCTAGTGTCCTTGAAATGCTTAGAAATAGATTGGAAGAAGTTGTGCCCCTGATGGAGACTGGTGGTCCTGTAGCTCCAAGAGTTCCTCCTGCAAGTAAAGAAGTTGTGGCGAAACTTCCTGTCATTAGTCTCACAGAAGAAATCCTAGCTAATATGGGGAAAGATGCAGAATGTGCCATTTGCAGGGAAAATCTGGTGTTAAATGACAACATGCAAGAGTTGCCGTGCAAGCACACATTCCACCCACCATGTCTAAAGCCATGGCTGGAGGAGCACAATTCTTGTCCAATCTGTCGTTACGAACTGCAAACTGATGATCATGCCTATGAGAGCTGGAAGGAACGTGAAAAAGAAGCTGAAGAGGAGAGGAAAGGTGCTGCAAATGCTCTTCGAGGTGGTGAATTCATGTATGTTTAG 942 0.4352 MESENLIKQELEELQKQLGKKQKFEDAVSSLKSLLQQSYPSASTSLRKSFYTVICRVATVLKTRYTAPGFWSAGLGLFEQAISFVSEPSEKEHLKACIAQARENLHLEDNPSQTLQTAVNRENRGYLFEGHLTVDQEPPQPDWMVQANLLAAAARLFEAESSQGLATNGSTEDDAASVLEMLRNRLEEVVPLMETGGPVAPRVPPASKEVVAKLPVISLTEEILANMGKDAECAICRENLVLNDNMQELPCKHTFHPPCLKPWLEEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAANALRGGEFMYV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3493 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Tpr1g3493 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 307 - -
Tpr1g3493 313 Coils Coil 7 27 - -
Tpr1g3493 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Tpr1g3493 313 PANTHER ABI3-INTERACTING PROTEIN 2-1 8 307 - -
Tpr1g3493 313 SUPERFAMILY RING/U-box 227 280 - -
Tpr1g3493 313 Pfam Ring finger domain 232 274 IPR001841 -
Tpr1g3493 313 SMART ring_2 233 273 IPR001841 -
Tpr1g3493 313 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3493 Tpr-Chr1 39124828 39127989 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3493 7 313 C3H Transcription Factor Family AT5G20910 62.136 2.21e-126 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3493 K16274 - gmx:100798732 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3493 1 39124828 39127989 Tpr1g3493 1 39124828 39127989 ECH