Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3488 ATGGTTTGTGAGATGGAAAGTGATTGTATTGAAGACATGATGGACATTGAAGTTCTATCATCAATGTGGCCAGAAGATGTTGGAACTGATGTTGGAAAACAGTTCAACATCGAAAAACCAGGAAGAGATCAAGATATGTTGGAAGAAGTAACAATCTTAGAAGAACCAGCTATAGCTGATTTTCAAAGATTAATGGAGCTAACAAATTATACAGATAAAGGGTCATCTCAATTGGCTTATTTAATGCAACATTGGGAGTATAAGCAAGCAAACGCGGTTCGACTTCTTCGAGAAGAGCTTGACAATCTTAGTAAACAAAGGAAGGAAGTTGAGCTTAGAAAATTGGAGATAATTAAAGATAATAACCGATTCGAGGAAGAGAGTTACGCGGGAGATAAACGTCCGGTTTCGATATTAGATGATGCTTATTATACATGGCAAGATCTACCTGTTGCAATAAGGAAAAGTGATGTTGTTGTTGAAAACAAGAGAGTTGAAATTGAAGCCGAGTATGATACGGTTGTTTATTGGAAACATCGGTCGCAAGATTTGGAAAAACAGTTGGAGGCGAGTATTCGGAGAGAAGAGATATTGAAGGAAAAGTTGCAAGAAAGTATTGAGACTATTGAAAGACAATCCTCACCTGTTGAAGAATTGACACAGATTCTTAAGAGAGCAGATAATTTCTTACATTTTATACTTCAAAATGCACCTGTTGTTATTGGCCATCAGGACAAAGAGTTGCGCTATCGCTTTATCTATAATCATTTTCCAAGTTTACAAGAGGAGGACATCATAGGAAAAACAGATGTCGAAATTTTCACAGGAGCAGGTGTGAAAGAGTCTCAAGATTTTAAAAGAGAAGTAATGGAGAAAGGAGTAGCTGCAAAAAAGGAAATAACTTTTGAGACGGAACTATTTGGATTTAAGACATTTTTGATATATGTAGAACCTGTGTTTAGCAAAGCCGGGGAAACAATTGGAGTAAACTATATGGGAATGGAAATAACAGATCAGGTGAGAAAAAGAGAAAGAATGGCAAAACTAAGGGAAGAAATTGCGGTTCAGAAAGCTAAGGAAACAGAACTTAATAAAACCATTCACATTACAGAGGAAACAATGAGAGCAAAACAAATGCTGGCGACAATGTCTCATGAGATAAGATCGCCGCTTTCTGGTGTTGTTAGCATGGCTGAAATTCTTACTACTACAAAACTTGATAAGGAGCAAAGACAGCTCTTGGATGTCATGATATCTTCAGGAGATTTGGTTCTTCAACTTATAAATGACATACTTGATCTTTCTAAGGTTGAATCAGGAGCTATGAAATTAGAAGCTACGAAATTCAGGCCTAGAGAGGTGGTAAGACATGTACTCCAAACAGCTGCAGCATCATTGCAGAAAATGTTAACATTGGAAGGAAATATAGCTGATGATATACCTATCGAGGTCACTGGAGATGTTTTAAGGATTAGGCAAATTCTGACAAATTTAGTCAGCAATGCGGTCAAGTTTACAGCACAAGGCAAAGTTGGTATAAACCTTTATGTCATTCCAGAGCCACCATTTGCCAAAACAGAAGAATCTCCCCAAAAGGTGACAGAAAACCAGTCAACTATTTCAGCAAATGGACTGAAGGAAGAGAAGTATACATCGTCACCGAGAAGTACTAGATGTGATCAAAATCTTATTGATGACAAAAAGCACACTGACCAAACAATCCAAAATCATGCATTTAGCAATGACTGTAGATCTTCAGTTAACAGTGAATGCTCAATGAATGACGATGCTGAGGAACAACATCATTCAACTGAAACAACGGTGTGGATACGTTGTGATGTGTACGACACAGGAATCGGCATACCAGAAAAGGCTATACCTACTTTATTTAGAAGGTACATGCAAGTTAGTGCAGATCATGCTCGAAAATATGGTGGCACAGGTCTAGGACTCGCAATATGTAAACAACTGGTTGAATTGATGGGGGGTCGACTAACGGTGACTAGCAAAGAACATTGTGGTTCTACCTTCACATTCATACTACCATACAAAGTATCAACAACTTGTGATAATTCTGATGATCCAGATGAGCTTTCAGATGTCGAAAATGACGATGACACAACCGAGGGATTCTTCCAATTCCAACCGCGAACTTTAGGCTCACTTTTCACTTCTAATGGATCAACCAGGCTACACAGAATCTCACACAAGTTCAACGGTTTTCCAGACAACAATTGTCACTCAAATCTCTCTAGTAACATCATTTCAAATGGAACAAATTCACTTGAAGATGCATCTTCTGTTACTGTTGATGCTTCAGATATGTCGGAATCAACAAGTTCGTCAACTCATAGCACAGAAACAAAGCATGAAAGTTTAGTTAATGGAAACAAACAGAACCATGATAATAAGGTGCATGATAAGTTACAAAATGGTTTTGCAATCTCCAGTCAATGTAAGGATGCAAGTAGAGAAATGAATTTAGAAACAAAATCAAGCGAACCGAAGCAAATATGTCAAGGTCAAGCGAAGGAAGATAGTACTACTAGTACTAGCATATCATCAGAAGTAACCAAATCGACATTAAAGCCGAGTATTCTTCTTGTTGAAGATAACAAGATTAATATCATGGTGACAAAGTCAATGATGAAGCAGCTAGGATATACCATGGATGTTGTGAATAATGGAGTGGAAGCCATACACGCAGTTCAGAGTCATTCTTACGACATTATCTTAATGGATGTTTACATGCCAGTTATGAATGGTCTTCAAACAACAAAACTGATTAGGTCTTACGAGGAAACAGGCAACTGGGATGCTGCAAGAGAAGCTGGAGTTGAACAAAGTTCATCTGCTTCAGATGAATGTTCCGTACCACCTAAAAAGCGCATCCACATTGTCGCGATGACAGCAAACACAATGTCAGAGAGTGCAGAAGAATGTTTCGCCATCGGTATGGACTCATTTGTGTCAAAACCAGTCACATTCCAAAAAATGAAAGAGTGTCTTGAAAAGTATCTAAGGTGA 3027 0.3809 MVCEMESDCIEDMMDIEVLSSMWPEDVGTDVGKQFNIEKPGRDQDMLEEVTILEEPAIADFQRLMELTNYTDKGSSQLAYLMQHWEYKQANAVRLLREELDNLSKQRKEVELRKLEIIKDNNRFEEESYAGDKRPVSILDDAYYTWQDLPVAIRKSDVVVENKRVEIEAEYDTVVYWKHRSQDLEKQLEASIRREEILKEKLQESIETIERQSSPVEELTQILKRADNFLHFILQNAPVVIGHQDKELRYRFIYNHFPSLQEEDIIGKTDVEIFTGAGVKESQDFKREVMEKGVAAKKEITFETELFGFKTFLIYVEPVFSKAGETIGVNYMGMEITDQVRKRERMAKLREEIAVQKAKETELNKTIHITEETMRAKQMLATMSHEIRSPLSGVVSMAEILTTTKLDKEQRQLLDVMISSGDLVLQLINDILDLSKVESGAMKLEATKFRPREVVRHVLQTAAASLQKMLTLEGNIADDIPIEVTGDVLRIRQILTNLVSNAVKFTAQGKVGINLYVIPEPPFAKTEESPQKVTENQSTISANGLKEEKYTSSPRSTRCDQNLIDDKKHTDQTIQNHAFSNDCRSSVNSECSMNDDAEEQHHSTETTVWIRCDVYDTGIGIPEKAIPTLFRRYMQVSADHARKYGGTGLGLAICKQLVELMGGRLTVTSKEHCGSTFTFILPYKVSTTCDNSDDPDELSDVENDDDTTEGFFQFQPRTLGSLFTSNGSTRLHRISHKFNGFPDNNCHSNLSSNIISNGTNSLEDASSVTVDASDMSESTSSSTHSTETKHESLVNGNKQNHDNKVHDKLQNGFAISSQCKDASREMNLETKSSEPKQICQGQAKEDSTTSTSISSEVTKSTLKPSILLVEDNKINIMVTKSMMKQLGYTMDVVNNGVEAIHAVQSHSYDIILMDVYMPVMNGLQTTKLIRSYEETGNWDAAREAGVEQSSSASDECSVPPKKRIHIVAMTANTMSESAEECFAIGMDSFVSKPVTFQKMKECLEKYLR* 1009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3488 1008 CDD HisKA 374 436 IPR003661 GO:0000155|GO:0007165
Tpr1g3488 1008 CDD REC_hyHK_CKI1_RcsC-like 866 1003 - -
Tpr1g3488 1008 PRINTS Bacterial sensor protein C-terminal signature 610 624 IPR004358 GO:0016310|GO:0016772
Tpr1g3488 1008 PRINTS Bacterial sensor protein C-terminal signature 645 663 IPR004358 GO:0016310|GO:0016772
Tpr1g3488 1008 PRINTS Bacterial sensor protein C-terminal signature 669 682 IPR004358 GO:0016310|GO:0016772
Tpr1g3488 1008 Pfam His Kinase A (phospho-acceptor) domain 377 440 IPR003661 GO:0000155|GO:0007165
Tpr1g3488 1008 MobiDBLite consensus disorder prediction 765 802 - -
Tpr1g3488 1008 Coils Coil 346 366 - -
Tpr1g3488 1008 Gene3D - 363 440 - -
Tpr1g3488 1008 Gene3D - 441 690 IPR036890 -
Tpr1g3488 1008 SUPERFAMILY CheY-like 864 1008 IPR011006 -
Tpr1g3488 1008 SMART HKATPase_4 486 685 IPR003594 -
Tpr1g3488 1008 CDD HATPase_EvgS-ArcB-TorS-like 491 682 - -
Tpr1g3488 1008 PANTHER HISTIDINE KINASE CYTOKININ RECEPTOR 5 1007 - -
Tpr1g3488 1008 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 486 683 IPR003594 -
Tpr1g3488 1008 ProSiteProfiles Response regulatory domain profile. 865 1007 IPR001789 GO:0000160
Tpr1g3488 1008 Coils Coil 181 212 - -
Tpr1g3488 1008 Gene3D - 857 1008 - -
Tpr1g3488 1008 SMART HisKA_10 375 440 IPR003661 GO:0000155|GO:0007165
Tpr1g3488 1008 MobiDBLite consensus disorder prediction 832 856 - -
Tpr1g3488 1008 Gene3D PAS domain 215 352 - -
Tpr1g3488 1008 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 374 440 IPR036097 GO:0000155|GO:0007165
Tpr1g3488 1008 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 454 682 IPR036890 -
Tpr1g3488 1008 Coils Coil 93 127 - -
Tpr1g3488 1008 MobiDBLite consensus disorder prediction 824 856 - -
Tpr1g3488 1008 PANTHER TWO-COMPONENT HISTIDINE PROTEIN KINASE 5 1007 - -
Tpr1g3488 1008 SMART REC_2 864 1003 IPR001789 GO:0000160
Tpr1g3488 1008 Pfam Response regulator receiver domain 866 934 IPR001789 GO:0000160
Tpr1g3488 1008 ProSiteProfiles Histidine kinase domain profile. 382 685 IPR005467 -
Tpr1g3488 1008 MobiDBLite consensus disorder prediction 765 793 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3488 Tpr-Chr1 39083333 39089447 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3488 1 525 Histidine Kinase Gene Family AT5G10720 70.209 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tpr1g3488 HATPase_c 7.2e-27 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3488 - - cam:101512841 1717.21