Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3484 ATGGCTATTAAGCTATGCGATTCCTGCAAGTCAGCAAAGGCAACACTATTCTGCCGTTCTGACTCAGCTTTCCTCTGTATCACCTGTGACTCCAACATCCACGCAGCTAACAAACTCGCCTCCCGCCACCACCGCGTCTCACTTTGCGAAGTTTGCGAGCAAGCTCCAGCTCATGTCACCTGCAAAGCTGATGCCGCCGCTCTCTGCGTCTCCTGTGATCACGACATCCACTCCGCTAACCCCCTGGCTCGCCGTCACGAACGCATCCCTCTAACCACCTTCCATCACCACAACAACAGCGAACAACAATTCTTCCCCGAATCCGATCCCGATGCTGATGTCAGCACCGAAGAAGCCGAAGCTGCTTCTTGGCTCCTCCAAACTCCTTCCAACCCTAAATTCCCCGATCTCAACGCCTCGCACTACTCATTAAACGAAATCGATGCTATCGATGCTACCGACCTCGATTTCGTATCCGTCGACACTAAAACAGACATACCGGAGCAACAAAGTCCCGGCACCGCAGACGGTGTCGTACCGGTGCAGTCTCAGAACAAAACCGCCACCGAACACTACTCCGATATCAACATCGATTTCTCAAACTCCAAACCTTTCACTTACAGTTACAATCACAACGTATCGTCACCGTCGATGGAGGTTGGAGTTGTACCGGACGGGAATACGGAGATATCTTACTGCGGTTACCGGAGTACGGCGACGGAGGCGGTGGTGATGACGGCGGCGGATAGAGAAGCTAGAGTTATGAGATACAGAGAGAAGAGAAAGAATCGAAGGTTCGAGAAAACGATTCGTTACGCTTCGAGAAAAGCATATGCAGAAACTAGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCTGATTTGAATGTCAATCTAATTGCAGAAGATGAATACGGCGTCGTTCCGTCTTGTTGA 936 0.5053 MAIKLCDSCKSAKATLFCRSDSAFLCITCDSNIHAANKLASRHHRVSLCEVCEQAPAHVTCKADAAALCVSCDHDIHSANPLARRHERIPLTTFHHHNNSEQQFFPESDPDADVSTEEAEAASWLLQTPSNPKFPDLNASHYSLNEIDAIDATDLDFVSVDTKTDIPEQQSPGTADGVVPVQSQNKTATEHYSDINIDFSNSKPFTYSYNHNVSSPSMEVGVVPDGNTEISYCGYRSTATEAVVMTAADREARVMRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNVNLIAEDEYGVVPSC* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3484 311 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Tpr1g3484 311 SMART bboxneu5 1 48 IPR000315 GO:0008270
Tpr1g3484 311 SMART bboxneu5 49 91 IPR000315 GO:0008270
Tpr1g3484 311 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 5 3 310 - -
Tpr1g3484 311 Pfam B-box zinc finger 5 47 IPR000315 GO:0008270
Tpr1g3484 311 Pfam B-box zinc finger 47 91 IPR000315 GO:0008270
Tpr1g3484 311 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Tpr1g3484 311 CDD Bbox1_BBX-like 5 48 - -
Tpr1g3484 311 ProSiteProfiles CCT domain profile. 250 292 IPR010402 GO:0005515
Tpr1g3484 311 CDD Bbox1_BBX-like 48 91 - -
Tpr1g3484 311 Pfam CCT motif 250 292 IPR010402 GO:0005515
Tpr1g3484 311 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 3 310 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3484 Tpr-Chr1 39060998 39062367 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3484 1 296 C2C2-CO-like Transcription Factor Family AT5G24930 53.602 3.73e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Tpr1g3484 zf-B_box 6.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3484 - - mtr:MTR_1g013450 518.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tpr1g3484 1 39060998 39062367 Tpr1g3484 1 39060998 39062367 ECH