Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr1g3462 ATGGATGAAAAGGTGGAAACTCTTCAATTAGAGTTACAACAAGTGAGAGAAGAGAACAATACTTTAAGATTTATGCTTGAAGTTATGAGTATTAAGTGCACAAAGCTTGAGTCTCAACTTCAAGAGATTAAAAAGGAAGAACACAAAGGAACAAGTTCAAATCAAATTGGTTTAGTACCTAACATTGACTCAAACAAAAGAGCAAGACTAGAGTTTCCAACAGCTAAAAAGCCATTAGAAGTCTTTGTCAGAACCAATCCTAATGATGATAATTTGACAATAAAAGATGGATATCAATGGAGGAAGTATGGGCAGAAGGTCACCAAAGACAATGCTTCTCCAAGAGCTTACTTTAGGTGCTCCATGGCTCCTAGTTGCCTTGCAAAAAAGAAGGTACAAAAATGCATACATGATAGGTCTATCATTGTTGCAACATATGATGGAGAGCACAACCATGGTGTCCCTCATCAGTCATTCAAACCATCTTCATCCACACTTAATTTTTCATCAATATCTAATAATAAATTACCACCAACATTAAATGACAAAGAAACCATAAACACTGGAATTTGTGAGGATGTCATGCAACAGTTTGGCTATGGAAAGCACATCAAAATTGAAGAATATGCAAGTTCCCTAATCAAAGATTCTGATTTCACTGCAGCATTGGCTGAAGCAGTTGTACAAAATATCACCGGTCAACATAAGCGACAAGGTCTAAACCTCGATTTGAATCTTTCAGAAGAGTGA 750 0.3627 MDEKVETLQLELQQVREENNTLRFMLEVMSIKCTKLESQLQEIKKEEHKGTSSNQIGLVPNIDSNKRARLEFPTAKKPLEVFVRTNPNDDNLTIKDGYQWRKYGQKVTKDNASPRAYFRCSMAPSCLAKKKVQKCIHDRSIIVATYDGEHNHGVPHQSFKPSSSTLNFSSISNNKLPPTLNDKETINTGICEDVMQQFGYGKHIKIEEYASSLIKDSDFTAALAEAVVQNITGQHKRQGLNLDLNLSEE* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr1g3462 249 Coils Coil 5 46 - -
Tpr1g3462 249 Gene3D WRKY domain 80 156 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr1g3462 249 Pfam WRKY DNA -binding domain 95 152 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g3462 249 PANTHER WRKY TRANSCRIPTION FACTOR 49 2 231 - -
Tpr1g3462 249 ProSiteProfiles WRKY domain profile. 89 155 IPR003657 GO:0003700|GO:0006355|GO:0043565
Tpr1g3462 249 SUPERFAMILY WRKY DNA-binding domain 91 155 IPR036576 GO:0003700|GO:0006355|GO:0043565
Tpr1g3462 249 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 231 IPR044810 GO:0003700
Tpr1g3462 249 SMART WRKY_cls 94 154 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr1g3462 Tpr-Chr1 38887600 38889599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr1g3462 2 235 WRKY Transcription Factor Family AT1G80840 35.294 7.98e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Tpr1g3462 WRKY 1.2e-21 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr1g3462 - - mtr:MTR_1g013790 399.438